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OR003939.1__WJZ48091.1__X__00043

Bact-Vir

OR003939.1__WJZ48091.1__X__00043

Identity

Accession:
OR003939 ↗
Kingdom:
phage

Quality

89.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Phage_DSL-LC04

TaxID: 3058958

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 22-96
PDB
Domain cluster: rep: MW749009.1__QXN70912.1__DARTUKUTA_59__00058__D28-115
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF18602.7 best Rap1a 51.8 1.30e-13 100.0% 78.9%
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3zfiA00 1.10.890.40 Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › 0.93 88.0 8.08e-01 100.0% 82.8%
2wwxB00 1.20.1260.70 Mainly Alpha › Up-down Bundle › Ferritin › 0.61 50.0 3.67e-01 89.3% 83.0%
2hkuB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.57 50.0 3.81e-01 100.0% 49.7%
1rp3A01 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.57 47.0 4.60e-01 93.3% 84.7%
6ks6G01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.56 48.0 3.38e-01 100.0% 28.5%
4akgA06 1.10.8.710 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Dynein motor, AAA1 domain, small subdomain 0.56 46.0 4.22e-01 96.0% 70.1%
8carA01 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.55 43.0 2.77e-01 85.3% 83.3%
4akgA13 1.10.8.740 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.54 44.0 4.29e-01 90.7% 83.5%
2xseA00 1.20.120.1440 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › JBP1, DNA-binding domain 0.54 40.0 3.28e-01 84.0% 49.7%
1tfkB00 1.20.120.650 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Colicin D 0.53 38.0 3.71e-01 76.0% 94.2%
5z5mA01 1.10.3330.10 Mainly Alpha › Orthogonal Bundle › UraD-like › Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase 0.52 36.0 2.94e-01 72.0% 91.3%
2qgsB01 1.10.472.50 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like 0.52 39.0 3.75e-01 80.0% 87.5%
3behB01 1.20.120.540 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels 0.51 45.0 3.88e-01 98.7% 76.9%
3qcmA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.50 41.0 2.90e-01 97.3% 90.6%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2429324 185.3.1.1 ↗ alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Rap1a › Rap1a › Rap1a 0.94 89.0 7.89e-01 100.0% 87.1%
1031113 185.3.1.1 ↗ alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Rap1a › Rap1a › Rap1a 0.92 87.0 7.98e-01 100.0% 81.9%
5049110 2006.1.1.18 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.68 54.0 3.76e-01 88.0% 28.0%
4451760 142.1.1.3 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.64 55.0 4.66e-01 100.0% 61.5%
4929005 3457.1.1.1 ↗ alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease › Peptidase_A24 0.63 46.0 3.23e-01 77.3% 92.7%
3590273 142.1.1.39 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › DUF1189 0.60 47.0 3.96e-01 92.0% 75.2%
4355863 5001.1.1.64 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › PalH 0.58 49.0 3.34e-01 93.3% 79.6%
4128045 142.1.1.3 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.57 47.0 4.45e-01 94.7% 74.7%
3289790 235.1.1.23 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme2 0.57 44.0 3.53e-01 84.0% 73.5%
3394467 142.3.1.0 ↗ alpha complex topology › Sigma2 domain-like › Mitochondrial morphogenesis protein Sld7 C-terminal domain › Mitochondrial morphogenesis protein Sld7 C-terminal domain 0.55 46.0 4.35e-01 94.7% 92.2%
3701767 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.53 47.0 3.55e-01 100.0% 53.5%
5023341 4009.1.1.1 ↗ alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › ARMT1-like_dom 0.52 39.0 4.05e-01 100.0% 92.9%
4278834 140.1.1.5 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon_1 0.51 39.0 2.89e-01 84.0% 52.9%
5022794 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 39.0 3.73e-01 84.0% 90.0%
3603712 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.51 45.0 4.08e-01 98.7% 97.0%
3387561 3236.1.1.1 ↗ alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › Na_H_Exchanger 0.51 40.0 2.68e-01 93.3% 81.6%