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OR003939.1__WJZ48100.1__X__00052
Bact-VirOR003939.1__WJZ48100.1__X__00052
Identity
- Accession:
- OR003939 ↗
- Kingdom:
- phage
Quality
77.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-76
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1gaxA05 | 1.10.287.380 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain | 0.76 | 45.0 | 4.55e-01 | 70.8% | 58.9% |
| 4bx9C00 | 1.10.150.780 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Vps16, C-terminal region | 0.72 | 57.0 | 5.16e-01 | 84.7% | 64.2% |
| 6vddA02 | 1.20.1060.10 | Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 | 0.69 | 56.0 | 4.75e-01 | 87.5% | 80.0% |
| 4hwhE00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.66 | 46.0 | 4.28e-01 | 80.6% | 59.1% |
| 1kl9A02 | 1.10.150.190 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Translation initiation factor 2; subunit 1; domain 2 | 0.66 | 50.0 | 4.61e-01 | 86.1% | 63.0% |
| 4kc9A02 | 1.20.120.1750 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.64 | 50.0 | 3.53e-01 | 84.7% | 52.9% |
| 3vkgA11 | 1.20.920.20 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › | 0.64 | 51.0 | 4.45e-01 | 87.5% | 70.0% |
| 3ragB00 | 3.40.50.410 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain | 0.63 | 55.0 | 3.81e-01 | 94.4% | 35.8% |
| 2i7uA00 | 6.10.250.1010 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.63 | 43.0 | 4.55e-01 | 86.1% | 82.3% |
| 5cqgA03 | 1.10.10.2210 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.61 | 38.0 | 3.70e-01 | 80.6% | 57.0% |
| 2r2iA01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.57 | 37.0 | 3.33e-01 | 72.2% | 48.5% |
| 2g47A04 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.56 | 41.0 | 2.96e-01 | 81.9% | 60.0% |
| 3layF00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.55 | 43.0 | 4.23e-01 | 86.1% | 85.9% |
| 6muwB00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.54 | 44.0 | 3.03e-01 | 86.1% | 41.0% |
| 5fmgG00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.54 | 44.0 | 3.08e-01 | 86.1% | 41.6% |
| 5fmgF00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.53 | 43.0 | 3.01e-01 | 86.1% | 42.0% |
| 3h4cA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.53 | 37.0 | 3.45e-01 | 75.0% | 81.2% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3482082 | 3476.1.1.0 ↗ | alpha arrays › RecQL4 helicase N-terminal domain › RecQL4 helicase N-terminal domain › RecQL4 helicase N-terminal domain | 0.83 | 57.0 | 5.77e-01 | 91.7% | 72.9% |
| 3482079 | 3476.1.1.2 ↗ | alpha arrays › RecQL4 helicase N-terminal domain › RecQL4 helicase N-terminal domain › RecQL4 helicase N-terminal domain › PF26116 | 0.79 | 56.0 | 5.63e-01 | 93.1% | 72.6% |
| 4962879 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.78 | 54.0 | 4.10e-01 | 94.4% | 31.9% |
| 3571718 | 3476.1.1.2 ↗ | alpha arrays › RecQL4 helicase N-terminal domain › RecQL4 helicase N-terminal domain › RecQL4 helicase N-terminal domain › PF26116 | 0.78 | 56.0 | 5.43e-01 | 95.8% | 67.5% |
| 4940618 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.78 | 47.0 | 4.54e-01 | 83.3% | 55.0% |
| 3491418 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.76 | 55.0 | 5.50e-01 | 100.0% | 73.3% |
| 3606823 | 3476.1.1.0 ↗ | alpha arrays › RecQL4 helicase N-terminal domain › RecQL4 helicase N-terminal domain › RecQL4 helicase N-terminal domain | 0.73 | 47.0 | 5.10e-01 | 86.1% | 78.3% |
| 5002845 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.73 | 63.0 | 5.31e-01 | 95.8% | 65.8% |
| 5003363 | 7000.1.1.1 ↗ | alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › HTH_OrfB_IS605 | 0.73 | 48.0 | 4.47e-01 | 84.7% | 54.4% |
| 3439564 | 603.1.1.1 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin | 0.72 | 66.0 | 4.83e-01 | 100.0% | 38.9% |
| 5021829 | 605.6.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › HP1531-like › HP1531-like | 0.72 | 62.0 | 5.77e-01 | 95.8% | 77.8% |
| 3782013 | 3281.1.1.1 ↗ | alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M | 0.69 | 59.0 | 3.53e-01 | 91.7% | 14.2% |
| 3171523 | 5086.1.1.119 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › RRG1_C | 0.69 | 60.0 | 4.82e-01 | 97.2% | 72.1% |
| 5000495 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.68 | 55.0 | 3.81e-01 | 90.3% | 26.2% |
| 3858057 | 101.42.1.1 ↗ | alpha arrays › HTH › CC2 domain in SUN proteins › CC2 domain in SUN proteins › HTH_SUN2 | 0.67 | 48.0 | 4.81e-01 | 97.2% | 73.3% |
| 4016091 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.67 | 57.0 | 5.38e-01 | 100.0% | 77.6% |
| 4041102 | 3960.1.1.1 ↗ | alpha arrays › Aminoglycoside adenyltransferase AadA C-terminal domain › Aminoglycoside adenyltransferase AadA C-terminal domain › Aminoglycoside adenyltransferase AadA C-terminal domain › AadA_C | 0.66 | 40.0 | 3.55e-01 | 75.0% | 41.9% |
| 3708196 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.66 | 61.0 | 5.59e-01 | 100.0% | 80.0% |
| 5040661 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.65 | 46.0 | 4.65e-01 | 100.0% | 75.7% |
| 3873240 | 378.1.1.25 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › MH1+NfI_DNAbd_pre-N | 0.59 | 45.0 | 3.35e-01 | 81.9% | 70.8% |
| 3477670 | 190.1.1.0 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box | 0.58 | 38.0 | 4.01e-01 | 81.9% | 75.4% |
| 5039745 | 2003.1.1.36 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › 3HCDH_N | 0.57 | 45.0 | 3.22e-01 | 94.4% | 28.0% |
| 4529152 | 3754.1.1.1 ↗ | alpha bundles › Bacterial cell wall synthesis membrane enzyme MraY-related › Bacterial cell wall synthesis membrane enzyme MraY-related › Bacterial cell wall synthesis membrane enzyme MraY-related › Glycos_transf_4 | 0.54 | 43.0 | 2.91e-01 | 90.3% | 54.5% |
| 4944926 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.51 | 43.0 | 3.22e-01 | 100.0% | 65.4% |