←Back to structures

OR003939.1__WJZ48130.1__X__00082

Bact-Vir

OR003939.1__WJZ48130.1__X__00082

Identity

Accession:
OR003939 ↗
Kingdom:
phage

Quality

93.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Phage_DSL-LC04

TaxID: 3058958

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 4-40
PDB
Domain cluster: representative
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3432362 101.1.1.121 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.66 57.0 3.92e-01 100.0% 53.6%
D2 medium residues 42-129
PDB
Domain cluster: rep: S27_BME27_1069154_prodigal-single.1__X__X__00299__D30-118
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6o38A04 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.68 58.0 5.86e-01 100.0% 94.4%
5j7mA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.67 42.0 3.76e-01 97.7% 45.1%
2q30A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.65 42.0 4.28e-01 97.7% 65.9%
4dnyA00 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.65 58.0 5.40e-01 100.0% 86.2%
6o38A01 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.62 55.0 5.44e-01 100.0% 98.9%
6o38A03 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.61 52.0 5.35e-01 94.3% 98.8%
3sqrA02 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.61 43.0 3.37e-01 73.9% 94.3%
3abgB01 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.58 45.0 3.70e-01 83.0% 71.6%
2g3mA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.57 34.0 3.58e-01 93.2% 65.3%
2vveA01 2.60.120.770 Mainly Beta › Sandwich › Jelly Rolls › 0.57 40.0 3.99e-01 96.6% 69.9%
1k8fA00 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.56 45.0 3.78e-01 100.0% 50.3%
3hwrA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 45.0 3.67e-01 88.6% 87.0%
2q9oA03 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.53 43.0 3.32e-01 90.9% 60.8%
5fq0A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 40.0 3.74e-01 83.0% 80.0%
3abgA02 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.52 45.0 3.75e-01 95.5% 76.5%
3cewA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 39.0 3.70e-01 90.9% 66.4%
1v70A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 42.0 3.99e-01 97.7% 77.1%
2b8mA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 40.0 3.83e-01 97.7% 71.6%
1y9qA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 39.0 3.91e-01 89.8% 80.6%
5lvxC02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.50 39.0 3.71e-01 85.2% 73.1%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3942383 520.2.1.0 ↗ beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE 0.91 85.0 8.44e-01 100.0% 95.6%
2581340 520.2.1.1 ↗ beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich 0.67 58.0 5.92e-01 100.0% 97.7%
1145904 12.1.1.50 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_31_3rd 0.64 37.0 3.94e-01 92.0% 64.1%
3415539 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.59 46.0 4.33e-01 85.2% 81.8%
4515393 207.11.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD 0.58 49.0 3.73e-01 100.0% 75.8%
223802 10.2.1.68 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Spike_JR2 0.57 40.0 4.21e-01 97.7% 82.3%
3935162 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.56 46.0 4.34e-01 92.0% 80.9%
5056065 3156.1.1.0 ↗ beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related 0.56 39.0 3.75e-01 71.6% 69.0%
3274898 3156.1.1.0 ↗ beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related 0.55 37.0 3.80e-01 95.5% 70.6%
4432524 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.55 41.0 4.10e-01 83.0% 84.2%
5022117 3156.1.1.3 ↗ beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Copper-bind 0.55 37.0 3.79e-01 70.5% 72.7%
4255748 5040.1.1.0 ↗ extended segments › Cytochrome c oxidase subunit II-like, transmembrane region › Cytochrome c oxidase subunit II-like, transmembrane region › Cytochrome c oxidase subunit II-like, transmembrane region 0.52 44.0 3.68e-01 96.6% 53.2%
5008399 3156.1.1.13 ↗ beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cupredoxin_1 0.52 36.0 3.41e-01 93.2% 59.0%
4074950 10.12.1.63 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › MPI_cupin_dom 0.52 40.0 4.02e-01 96.6% 83.3%
4024717 11.1.1.360 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › HYDIN_VesB_CFA65-like_Ig 0.51 37.0 3.54e-01 94.3% 67.0%
2137580 3156.1.1.13 ↗ beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cupredoxin_1 0.51 42.0 4.08e-01 97.7% 82.4%