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OR003940.1__WJZ48136.1__X__00003

Bact-Vir

OR003940.1__WJZ48136.1__X__00003

Identity

Accession:
OR003940 ↗
Kingdom:
phage

Quality

67.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Phage_DSL-LC05

TaxID: 3058959

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 90-141
PDB
Domain cluster: rep: MW824406.1__QZI92126.1__PODOV073v1_p0001__00001__D3-52
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jnsA01 1.20.1270.220 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.67 56.0 4.99e-01 100.0% 74.1%
1kblA05 1.20.80.30 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.65 55.0 4.70e-01 100.0% 66.3%
2ah5A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.64 43.0 4.10e-01 71.2% 92.3%
2z3xA00 6.10.10.80 Special › Helix non-globular › Helicase, Ruva Protein; domain 3 › Small, acid-soluble spore protein, alpha/beta type-like 0.62 48.0 4.74e-01 88.5% 83.9%
2zxqA06 1.20.1270.70 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle 0.62 50.0 4.79e-01 100.0% 81.8%
4z7xB00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.62 52.0 3.55e-01 100.0% 26.4%
3eujB00 1.10.225.40 Mainly Alpha › Orthogonal Bundle › NK-Lysin › MukF, C-terminal domain 0.61 40.0 3.40e-01 75.0% 40.0%
2mvtA00 1.10.60.50 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › 0.60 42.0 4.33e-01 90.4% 80.9%
1e7lA02 1.10.720.10 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.59 42.0 4.15e-01 76.9% 98.2%
4toiA02 1.10.287.610 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.56 38.0 3.93e-01 75.0% 75.0%
4azcA02 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.56 47.0 4.63e-01 100.0% 93.2%
1c4xA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 40.0 2.53e-01 78.8% 42.3%
3vfzB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 37.0 3.58e-01 73.1% 90.5%
4c2dA02 1.10.101.10 Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD 0.54 43.0 3.85e-01 100.0% 80.0%
4abmD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.52 36.0 3.18e-01 73.1% 59.7%
2rdcA00 1.10.287.800 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242 0.52 45.0 3.37e-01 100.0% 60.9%
1gyzA00 1.10.1900.20 Mainly Alpha › Orthogonal Bundle › c-terminal domain of poly(a) binding protein › Ribosomal protein L20, C-terminal domain 0.52 42.0 4.12e-01 100.0% 86.7%
6bs3B01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 44.0 2.72e-01 100.0% 38.9%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4972563 2006.1.1.43 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_PNKP 0.80 60.0 4.15e-01 82.7% 25.5%
2842227 3009.1.1.0 ↗ alpha arrays › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like 0.68 54.0 4.45e-01 100.0% 48.0%
3857499 101.1.1.65 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 0.67 45.0 3.65e-01 80.8% 36.0%
4944643 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.65 56.0 4.27e-01 98.1% 87.5%
3596357 327.11.2.3 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_6 0.64 52.0 4.07e-01 94.2% 40.8%
5053994 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.62 52.0 4.76e-01 100.0% 80.0%
3631404 1025.1.1.0 ↗ alpha bundles › Stonustoxin helical domain › Stonustoxin helical domain › Stonustoxin helical domain 0.62 53.0 4.10e-01 100.0% 69.2%
3958254 3317.1.1.0 ↗ alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain 0.61 47.0 4.43e-01 100.0% 68.6%
4591251 632.7.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 0.61 51.0 4.45e-01 100.0% 69.4%
4981781 5054.1.1.8 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.59 41.0 3.31e-01 76.9% 38.0%
5008556 3843.1.1.0 ↗ alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K 0.58 43.0 3.65e-01 80.8% 49.4%
3879684 223.2.1.46 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › FNIP_N, FNIP_M 0.57 48.0 3.39e-01 96.2% 84.2%
4339416 5058.1.1.16 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1 0.55 43.0 3.63e-01 86.5% 68.9%
3269226 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.54 38.0 3.46e-01 76.9% 61.3%