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OR003940.1__WJZ48145.1__X__00012

Bact-Vir

OR003940.1__WJZ48145.1__X__00012

Identity

Accession:
OR003940 ↗
Kingdom:
phage

Quality

81.9 mean pLDDT

Taxonomy

TaxID: 3058959

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 51-102
PDB
CATH (55)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3cpxA02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.64 52.0 5.06e-01 100.0% 100.0%
4zciA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.64 52.0 4.35e-01 98.1% 87.1%
1fhoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 47.0 3.74e-01 86.5% 68.1%
3e4wA02 2.40.180.10 Mainly Beta › Beta Barrel › Catalase HpII, Chain A, domain 1 › Catalase core domain 0.62 52.0 3.56e-01 98.1% 89.9%
4h75A00 2.80.10.70 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › Spindlin/Ssty 0.62 47.0 3.29e-01 88.5% 33.2%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 49.0 5.10e-01 88.5% 100.0%
3lnnA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.62 52.0 4.41e-01 100.0% 100.0%
2e6nA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 54.0 4.32e-01 100.0% 52.9%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 48.0 4.61e-01 92.3% 98.4%
2z9iC01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.61 48.0 4.05e-01 88.5% 75.0%
1yloE02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.61 49.0 4.36e-01 98.1% 100.0%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 47.0 4.60e-01 86.5% 86.4%
1x05A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 45.0 3.50e-01 84.6% 66.7%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 47.0 3.72e-01 90.4% 72.6%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 49.0 4.63e-01 92.3% 78.8%
4dt4A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.61 43.0 4.20e-01 76.9% 75.4%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 52.0 4.79e-01 98.1% 85.5%
2budA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 48.0 4.08e-01 92.3% 68.5%
5h7jA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.60 47.0 3.92e-01 96.2% 83.3%
5os9A00 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.60 49.0 3.99e-01 100.0% 88.7%
2dpyA00 3.40.50.12240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.60 49.0 2.96e-01 100.0% 17.1%
1b34B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 49.0 4.51e-01 98.1% 89.2%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 48.0 4.51e-01 90.4% 78.1%
2ej9A02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 46.0 4.69e-01 86.5% 100.0%
3kl9A02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.59 47.0 4.36e-01 96.2% 85.1%
4lduA03 2.30.30.1040 Mainly Beta › Roll › SH3 type barrels. › 0.59 43.0 4.14e-01 86.5% 100.0%
1v5uA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 44.0 3.53e-01 84.6% 73.5%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 51.0 4.61e-01 100.0% 75.3%
4fgoA00 3.10.620.30 Alpha Beta › Roll › C8orf32 fold › 0.58 43.0 3.07e-01 84.6% 28.7%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 47.0 4.14e-01 94.2% 77.1%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 50.0 4.92e-01 100.0% 98.2%
3mp6A05 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 50.0 4.75e-01 100.0% 90.5%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.57 48.0 4.17e-01 98.1% 79.1%
5yzzC00 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.57 46.0 3.79e-01 98.1% 88.3%
4hikA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 45.0 3.46e-01 94.2% 92.8%
4ii1A01 2.30.30.1190 Mainly Beta › Roll › SH3 type barrels. › 0.57 45.0 3.95e-01 88.5% 95.0%
4xtvB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.57 42.0 4.34e-01 84.6% 95.8%
4fvdA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 45.0 3.98e-01 100.0% 71.3%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.56 45.0 4.34e-01 96.2% 100.0%
1wgsA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 44.0 3.39e-01 92.3% 45.1%
5cmlA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.56 39.0 2.64e-01 78.8% 35.8%
2ia1A01 3.30.500.20 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › BH3703-like domains 0.56 39.0 3.14e-01 78.8% 91.6%
1ygyB03 3.30.1330.90 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › D-3-phosphoglycerate dehydrogenase; domain 3 0.55 37.0 2.83e-01 73.1% 70.5%
2ldmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 42.0 4.25e-01 88.5% 92.5%
2kr7A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.54 38.0 3.77e-01 80.8% 71.9%
2dhkA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 40.0 3.39e-01 84.6% 77.0%
4wz9A01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.54 44.0 3.05e-01 100.0% 34.6%
2bolB02 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 39.0 3.04e-01 78.8% 64.1%
4mypA00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 40.0 3.18e-01 84.6% 94.2%
6rtqA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.54 41.0 3.25e-01 92.3% 92.5%
7obmA02 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 39.0 2.54e-01 80.8% 38.4%
3f6zB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.53 39.0 3.64e-01 92.3% 89.9%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 42.0 4.04e-01 98.1% 98.4%
1h7zA00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.51 38.0 2.79e-01 90.4% 41.9%
3jtzA00 3.30.160.390 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain 0.51 36.0 3.25e-01 80.8% 51.9%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4108039 1.1.8.5 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.66 55.0 4.72e-01 94.2% 68.2%
4592324 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.64 53.0 4.60e-01 100.0% 96.7%
3932851 220.1.1.46 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_14 0.64 48.0 3.80e-01 84.6% 76.7%
3451500 1.1.11.0 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain 0.63 52.0 3.80e-01 98.1% 89.4%
4493188 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.63 52.0 4.41e-01 100.0% 89.5%
3595461 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 48.0 3.83e-01 88.5% 80.0%
3971321 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.62 53.0 4.86e-01 98.1% 97.1%
3973594 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.62 53.0 4.51e-01 100.0% 95.6%
3490216 220.1.1.36 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 0.62 46.0 3.61e-01 84.6% 74.4%
4947671 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.62 51.0 4.55e-01 98.1% 100.0%
5053432 1.1.7.22 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Peptidase_M42 0.62 52.0 4.38e-01 100.0% 98.9%
3913687 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.62 50.0 4.25e-01 92.3% 55.6%
4055256 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.61 50.0 4.22e-01 92.3% 57.8%
1408049 4.1.1.217 beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 0.61 50.0 3.72e-01 92.3% 39.0%
145704 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.61 48.0 4.68e-01 90.4% 86.2%
1283866 220.1.1.51 beta barrels › PH domain-like › PH domain-like › PH domain-like › ISP3_C 0.61 47.0 3.72e-01 90.4% 72.6%
4399542 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.61 49.0 4.30e-01 100.0% 94.4%
3858885 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 46.0 4.61e-01 84.6% 96.4%
96 1.1.7.22 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Peptidase_M42 0.60 47.0 4.25e-01 94.2% 100.0%
1567470 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.60 50.0 4.15e-01 96.2% 72.2%
3326132 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 48.0 4.53e-01 90.4% 75.4%
4581837 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.60 49.0 4.29e-01 100.0% 90.0%
4218142 4.1.1.101 beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.60 49.0 3.99e-01 92.3% 51.0%
3920026 4.1.1.101 beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.60 47.0 3.26e-01 94.2% 30.0%
3512272 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.60 51.0 4.60e-01 100.0% 97.3%
4132165 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.60 50.0 4.10e-01 100.0% 86.7%
1289661 4.1.1.101 beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.59 46.0 4.33e-01 88.5% 73.1%
1263713 4.1.1.102 beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.59 47.0 4.75e-01 90.4% 96.2%
3910727 4.1.1.353 beta barrels › SH3 › SH3 › SH3 › SH3_TNRC18 0.59 47.0 4.49e-01 98.1% 98.5%
3277790 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.59 49.0 4.05e-01 100.0% 89.5%
3576940 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 48.0 3.27e-01 98.1% 44.9%
5023371 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.59 47.0 4.08e-01 100.0% 94.7%
3802920 1.1.11.1 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.58 47.0 3.72e-01 98.1% 94.5%
3795384 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 45.0 3.02e-01 86.5% 23.7%
3581143 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.58 46.0 4.36e-01 90.4% 78.5%
4521518 1.1.7.121 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Phage_BR0599 0.58 48.0 3.89e-01 100.0% 64.3%
3769507 4.1.1.31 beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.58 44.0 4.10e-01 86.5% 81.4%
3642430 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.58 45.0 3.77e-01 88.5% 71.6%
3354387 4.1.1.217 beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 0.58 46.0 4.04e-01 92.3% 88.2%
4221708 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.58 48.0 4.40e-01 96.2% 90.0%
4975808 1.1.7.22 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Peptidase_M42 0.58 47.0 4.12e-01 100.0% 100.0%
3304602 4.1.1.427 beta barrels › SH3 › SH3 › SH3 › F-box 0.57 45.0 3.96e-01 100.0% 58.9%
3409299 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.57 44.0 4.03e-01 94.2% 70.0%
3712219 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.57 45.0 4.30e-01 92.3% 90.8%
4300564 1.1.12.1 beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth 0.57 42.0 3.41e-01 84.6% 68.7%
4104219 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.56 46.0 4.36e-01 100.0% 100.0%
3677429 1.1.7.67 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Trypsin_2 0.56 45.0 3.79e-01 94.2% 91.6%
None 0.56 41.0 2.62e-01 84.6% 55.7%
5079674 11.21.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein 0.55 43.0 4.03e-01 100.0% 94.7%
4347919 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.54 42.0 3.77e-01 100.0% 85.6%
3273263 5.1.4.169 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.54 37.0 2.28e-01 76.9% 25.3%
4051625 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.53 43.0 4.08e-01 96.2% 95.4%
4345080 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.53 41.0 3.97e-01 96.2% 96.9%
4292289 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.53 42.0 4.01e-01 96.2% 95.4%
3321067 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 41.0 3.64e-01 98.1% 84.4%
3659202 1.1.11.0 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain 0.52 37.0 3.31e-01 76.9% 91.3%
5029487 209.1.1.0 a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like 0.51 39.0 2.73e-01 90.4% 79.0%
4618633 4.26.1.1 beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › Cren7 0.51 37.0 3.59e-01 84.6% 69.5%
3273842 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 40.0 3.55e-01 94.2% 80.0%
3383246 1.1.11.0 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain 0.50 36.0 3.27e-01 84.6% 84.7%
3288805 286.1.1.0 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like 0.50 35.0 2.64e-01 76.9% 49.3%