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OR003940.1__WJZ48152.1__X__00019

Bact-Vir

OR003940.1__WJZ48152.1__X__00019

Identity

Accession:
OR003940 ↗
Kingdom:
phage

Quality

75.7 mean pLDDT

Taxonomy

TaxID: 3058959

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 39-153_182-204
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2r5sA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.55 26.0 3.13e-01 100.0% 65.9%
3l1nA02 1.20.1280.140 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.55 30.0 3.67e-01 71.0% 82.8%
2qr4A01 1.20.140.70 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Oligopeptidase f, N-terminal domain 0.55 37.0 3.54e-01 97.1% 58.3%
6lumG01 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.54 30.0 3.24e-01 89.9% 62.5%
3qbrX00 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.54 30.0 2.88e-01 100.0% 46.0%
1wpaA01 6.10.140.340 Special › Helix non-globular › Helix Hairpins › 0.53 30.0 3.45e-01 86.2% 75.8%
2xubA05 6.10.140.1450 Special › Helix non-globular › Helix Hairpins › 0.52 34.0 3.91e-01 86.2% 92.7%
1nafA02 1.20.58.160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 27.0 3.23e-01 87.7% 77.6%
3ljcA02 1.20.58.1480 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.50 27.0 2.88e-01 87.7% 56.3%
1fewA00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.50 37.0 3.46e-01 88.4% 61.3%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5043886 3755.3.1.637 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF7121 0.50 35.0 3.29e-01 86.2% 57.6%
D2 medium residues 326-353_375-427
PDB
Domain cluster: representative
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7qx4A01 1.20.190.10 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain 0.73 60.0 4.21e-01 86.4% 60.7%
2ewfA02 1.20.1270.310 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.72 42.0 4.28e-01 74.1% 59.3%
1dlcA01 1.20.190.10 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain 0.72 56.0 3.99e-01 82.7% 65.1%
1ciyA01 1.20.190.10 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain 0.71 56.0 4.04e-01 84.0% 67.0%
1i5pA02 1.20.190.10 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain 0.71 58.0 4.11e-01 87.7% 63.2%
3rc3A05 1.20.58.1080 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.69 51.0 4.55e-01 98.8% 55.8%
3sqiA01 1.10.150.540 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.69 46.0 4.30e-01 97.5% 55.6%
2nn4A00 1.10.287.760 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like 0.68 48.0 5.40e-01 98.8% 96.8%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.67 49.0 5.16e-01 95.1% 85.1%
3gi8C00 1.20.1740.10 Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I 0.62 52.0 3.40e-01 100.0% 78.9%
4ehsA00 1.10.860.10 Mainly Alpha › Orthogonal Bundle › DNAb Helicase; Chain A › DNAb Helicase; Chain A 0.62 48.0 4.14e-01 82.7% 90.3%
3ztaA00 1.10.490.130 Mainly Alpha › Orthogonal Bundle › Globin-like › 0.61 52.0 4.43e-01 97.5% 83.5%
2rldA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.60 53.0 4.77e-01 100.0% 82.5%
4dwlA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.59 53.0 4.82e-01 100.0% 87.0%
5u1aL00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.59 51.0 4.05e-01 96.3% 75.3%
2fgeA02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.58 50.0 3.67e-01 100.0% 60.7%
1nigA00 1.20.1200.10 Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like 0.58 48.0 3.99e-01 92.6% 82.9%
6d5xA00 1.20.1200.10 Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like 0.58 49.0 4.00e-01 93.8% 84.1%
2ig3A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.58 49.0 4.29e-01 97.5% 85.0%
1twcA01 4.10.860.120 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › RNA polymerase II, clamp domain 0.57 45.0 3.81e-01 84.0% 73.5%
7zmgL01 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.56 41.0 4.20e-01 87.7% 81.2%
3k6jA02 1.10.1040.50 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › 0.55 47.0 3.56e-01 96.3% 82.4%
1zhcA00 6.10.280.50 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 40.0 4.10e-01 77.8% 100.0%
1moqA01 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.55 45.0 3.33e-01 91.4% 63.3%
2odmA00 1.10.287.750 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like 0.54 41.0 4.14e-01 97.5% 84.8%
2pn2A00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.54 48.0 4.01e-01 98.8% 62.8%
4e21B02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.54 41.0 3.47e-01 100.0% 48.9%
1p65A00 6.10.140.90 Special › Helix non-globular › Helix Hairpins › 0.54 33.0 3.81e-01 97.5% 87.7%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.53 46.0 4.08e-01 97.5% 84.6%
1k74D00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.53 45.0 3.21e-01 100.0% 73.2%
3b9wA00 1.10.3430.10 Mainly Alpha › Orthogonal Bundle › Ammonium transporter fold › Ammonium transporter AmtB like domains 0.53 46.0 3.05e-01 100.0% 75.1%
1ptmA00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.52 45.0 3.02e-01 97.5% 36.3%
4dllB02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.52 45.0 3.87e-01 96.3% 73.1%
7wboA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.52 42.0 3.41e-01 95.1% 92.8%
2pkeA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.52 40.0 4.12e-01 98.8% 89.7%
1auoA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 44.0 3.30e-01 97.5% 58.7%
4c0eA02 1.25.40.800 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.51 42.0 3.11e-01 100.0% 33.8%
3c7aA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.51 44.0 3.33e-01 97.5% 44.9%
1b0bA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.50 43.0 3.68e-01 98.8% 91.5%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3016251 532.2.1.1 alpha arrays › Type III secretion system domain-like › Type III secretion system domains › Type III secretion system domains › HrpJ 0.75 47.0 4.80e-01 96.3% 64.6%
4287641 5000.4.1.1 alpha arrays › Toxins' membrane translocation domains › delta-Endotoxin (insectocide), N-terminal domain › delta-Endotoxin (insectocide), N-terminal domain › Endotoxin_N 0.74 58.0 3.90e-01 82.7% 53.0%
4887539 5000.4.1.1 alpha arrays › Toxins' membrane translocation domains › delta-Endotoxin (insectocide), N-terminal domain › delta-Endotoxin (insectocide), N-terminal domain › Endotoxin_N 0.72 57.0 3.93e-01 82.7% 58.7%
4385935 5000.4.1.1 alpha arrays › Toxins' membrane translocation domains › delta-Endotoxin (insectocide), N-terminal domain › delta-Endotoxin (insectocide), N-terminal domain › Endotoxin_N 0.72 57.0 3.96e-01 84.0% 59.2%
3250023 5000.4.1.1 alpha arrays › Toxins' membrane translocation domains › delta-Endotoxin (insectocide), N-terminal domain › delta-Endotoxin (insectocide), N-terminal domain › Endotoxin_N 0.71 56.0 3.81e-01 84.0% 56.0%
3251300 5000.4.1.1 alpha arrays › Toxins' membrane translocation domains › delta-Endotoxin (insectocide), N-terminal domain › delta-Endotoxin (insectocide), N-terminal domain › Endotoxin_N 0.71 56.0 3.90e-01 84.0% 62.0%
3897603 109.4.1.1286 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8, TPR_12 0.69 47.0 2.61e-01 93.8% 5.5%
3505507 1134.1.1.0 alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain 0.69 50.0 5.33e-01 96.3% 88.6%
4356531 4156.1.1.6 alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Helicase_dom4_arc 0.66 57.0 4.63e-01 97.5% 87.1%
3960235 2003.1.5.152 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › CMAS, Methyltransf_25 0.65 57.0 3.91e-01 100.0% 85.6%
3700988 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.65 46.0 4.64e-01 100.0% 73.8%
3283672 4121.1.1.1 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.64 51.0 3.55e-01 86.4% 67.0%
3643218 2003.1.5.152 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › CMAS, Methyltransf_25 0.64 56.0 3.85e-01 100.0% 86.0%
4084047 650.1.1.0 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.64 47.0 4.65e-01 100.0% 74.1%
4538487 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.63 47.0 4.65e-01 100.0% 74.1%
4095508 650.1.1.0 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.63 46.0 4.52e-01 100.0% 70.0%
4271480 650.1.1.0 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.63 46.0 4.80e-01 100.0% 84.0%
5016552 378.1.1.10 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 0.63 47.0 4.30e-01 98.8% 59.1%
3612865 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 50.0 3.04e-01 92.6% 13.9%
4968088 4156.1.1.0 alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like 0.63 56.0 4.50e-01 98.8% 85.2%
3436790 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 50.0 3.92e-01 86.4% 55.3%
3593555 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 50.0 3.77e-01 92.6% 36.8%
4013745 109.4.1.681 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans_2 0.62 49.0 3.14e-01 85.2% 23.5%
1391414 507.1.1.3 alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaGprimase_HBD 0.62 48.0 4.16e-01 82.7% 91.8%
4412725 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 52.0 3.87e-01 97.5% 38.4%
3169962 373.1.1.0 few secondary structure elements › Zn2/Cys6 DNA-binding domain › Zn2/Cys6 DNA-binding domain › Zn2/Cys6 DNA-binding domain 0.61 49.0 3.44e-01 85.2% 32.5%
4987734 4070.1.1.0 alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like 0.61 54.0 4.23e-01 97.5% 62.9%
2576198 1174.1.1.1 alpha complex topology › Potassium channel TMEM175 › Potassium channel TMEM175 › Potassium channel TMEM175 › TMEM175 0.61 53.0 3.89e-01 98.8% 80.2%
3212032 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.60 51.0 4.18e-01 92.6% 95.2%
3784466 109.2.1.2 alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Glyco_hydro_15 0.60 51.0 3.14e-01 93.8% 28.4%
4023558 4246.1.1.2 a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 0.59 46.0 3.02e-01 84.0% 81.4%
5012651 150.1.1.3 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Rubrerythrin 0.58 43.0 4.30e-01 88.9% 75.3%
3713079 5046.1.1.0 extended segments › F-type ATP synthase subunit b › F-type ATP synthase subunit b › F-type ATP synthase subunit b 0.58 46.0 3.86e-01 87.7% 50.4%
5052547 2007.1.11.5 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › L-fucose isomerase, N-terminal and second domains › PF31143 0.58 51.0 3.98e-01 100.0% 71.1%
3574603 5001.1.1.35 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srsx 0.58 52.0 3.79e-01 100.0% 77.7%
4940257 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.56 40.0 4.24e-01 100.0% 87.1%
3610347 103.2.1.0 alpha arrays › RuvA-C › ATP cone › ATP cone 0.56 47.0 4.68e-01 95.1% 87.1%
3702631 109.2.1.0 alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid 0.56 48.0 3.19e-01 93.8% 35.0%
3211044 633.10.1.0 alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like 0.56 48.0 4.27e-01 100.0% 79.2%
3622615 604.1.1.172 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › 7TM_GPCR_Srx 0.55 47.0 4.38e-01 96.3% 81.0%
3739751 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 45.0 3.75e-01 90.1% 75.9%
3773221 109.3.1.163 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_4, Ank_5 0.54 46.0 3.10e-01 92.6% 33.1%
3388952 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 42.0 3.22e-01 86.4% 39.0%
3925111 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 48.0 3.54e-01 100.0% 59.6%
3839894 180.1.1.1 alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 0.53 45.0 3.41e-01 100.0% 56.8%
5006787 150.2.1.1 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Cobalamin adenosyltransferase › Cobalamin adenosyltransferase › Cob_adeno_trans 0.52 44.0 3.56e-01 92.6% 80.0%
3744494 109.4.1.1827 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF27826 0.52 45.0 2.75e-01 97.5% 31.3%
3271551 180.1.1.1 alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 0.52 45.0 3.43e-01 100.0% 52.2%
3417343 109.4.1.1718 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF26716 0.52 44.0 3.79e-01 92.6% 82.4%
3416922 109.4.1.1199 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_Nup160_C 0.51 41.0 3.01e-01 90.1% 36.3%
3955642 180.1.1.1 alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 0.51 44.0 3.37e-01 100.0% 60.5%
4007623 220.1.1.150 beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF986 0.51 47.0 4.54e-01 98.8% 90.0%
3284985 180.1.1.1 alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 0.51 44.0 3.32e-01 100.0% 58.1%
3376126 109.4.1.1718 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF26716 0.51 42.0 3.79e-01 92.6% 87.8%
4252620 109.4.1.1134 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_INTS8_3 0.50 39.0 2.77e-01 88.9% 33.7%
3806548 109.4.1.1718 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF26716 0.50 42.0 3.88e-01 92.6% 93.3%