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OR003941.1__WKW35115.1__X__00018

Bact-Vir

OR003941.1__WKW35115.1__X__00018

Identity

Accession:
OR003941 ↗
Kingdom:
phage

Quality

83.3 mean pLDDT

Taxonomy

TaxID: 3058960

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 95-145
PDB
CATH (66)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2a5hA03 6.20.120.40 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.73 39.0 3.71e-01 90.2% 41.9%
1vwxH02 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.70 60.0 4.83e-01 100.0% 50.5%
5mmiG01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.69 53.0 4.66e-01 100.0% 54.8%
1epwA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.67 54.0 3.45e-01 88.2% 41.6%
1jnrB02 6.20.260.10 Special › Other non-globular › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Adenylylsulphate reductase, beta subunit, C-terminal domain 0.67 48.0 4.12e-01 100.0% 47.0%
6hoxA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.65 51.0 3.35e-01 88.2% 43.5%
2xcmC00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 53.0 4.51e-01 100.0% 66.3%
2h7fX02 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.63 48.0 3.15e-01 84.3% 23.7%
3cetB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.63 50.0 3.90e-01 88.2% 70.0%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.63 42.0 3.89e-01 90.2% 53.7%
4qrlA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.62 47.0 3.71e-01 82.4% 77.3%
3n8bA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 52.0 4.57e-01 94.1% 65.3%
4o8uA00 3.30.420.440 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF4152 0.61 50.0 3.29e-01 92.2% 24.7%
2xepB01 3.10.450.280 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 43.0 3.39e-01 94.1% 34.2%
7x3hA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.61 44.0 3.52e-01 80.4% 100.0%
1vpkA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.61 50.0 3.91e-01 94.1% 66.4%
1mtpA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.61 47.0 3.92e-01 86.3% 92.3%
6pxcA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.61 48.0 3.85e-01 88.2% 47.1%
1mbyA00 2.40.50.930 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 44.0 3.97e-01 82.4% 89.3%
2wweA01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.60 46.0 3.70e-01 86.3% 75.0%
2y1sA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.60 47.0 3.96e-01 100.0% 70.4%
1ci3M02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.59 48.0 4.61e-01 90.2% 89.7%
3bexA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.58 45.0 3.43e-01 88.2% 52.9%
2zxqA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.58 46.0 3.05e-01 100.0% 23.0%
1b9mA03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.58 41.0 3.77e-01 84.3% 54.9%
1n02A00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.58 45.0 3.89e-01 100.0% 67.6%
3mazA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.58 47.0 3.83e-01 90.2% 54.5%
5yjwA00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.58 41.0 2.46e-01 82.4% 8.6%
2xg5A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 43.0 3.65e-01 84.3% 93.5%
1z47A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 40.0 4.10e-01 84.3% 79.6%
3m4aA03 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.57 43.0 3.45e-01 86.3% 48.3%
6aonA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 37.0 2.87e-01 86.3% 27.6%
4jglA00 2.40.128.530 Mainly Beta › Beta Barrel › Lipocalin › 0.57 45.0 3.24e-01 88.2% 46.1%
2zgyA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.57 41.0 2.98e-01 82.4% 80.0%
3q48A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 44.0 3.81e-01 86.3% 94.0%
3nixB00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 47.0 2.87e-01 100.0% 49.8%
3a0oA03 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.57 44.0 2.94e-01 100.0% 63.7%
5aguA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.56 47.0 3.59e-01 96.1% 61.9%
1ykdB02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.56 42.0 2.94e-01 84.3% 49.7%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 47.0 4.01e-01 96.1% 83.9%
2zylA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.56 41.0 2.98e-01 84.3% 28.9%
1a78A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 44.0 3.38e-01 92.2% 48.5%
2xp1A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.56 44.0 3.69e-01 90.2% 51.6%
4gyiA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 45.0 3.71e-01 100.0% 48.0%
4ljzC06 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.56 43.0 4.01e-01 98.0% 92.0%
5jk0B01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.56 42.0 3.01e-01 84.3% 34.7%
2l2fA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.56 43.0 3.67e-01 100.0% 72.2%
3c96A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 45.0 3.27e-01 96.1% 61.3%
2d42A02 3.10.450.380 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 44.0 4.20e-01 94.1% 73.8%
1reoA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 47.0 3.48e-01 100.0% 67.6%
5iroD00 2.60.40.3530 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 49.0 3.88e-01 100.0% 89.2%
4mb7A01 3.20.190.10 Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › MutM-like, N-terminal 0.55 45.0 3.50e-01 94.1% 51.6%
7q04F01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.55 42.0 3.51e-01 94.1% 49.5%
7snsB01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 44.0 3.18e-01 94.1% 73.5%
7jooC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 40.0 3.34e-01 82.4% 76.3%
1b69A00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.54 41.0 3.73e-01 82.4% 68.1%
2jzlA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.54 42.0 3.52e-01 98.0% 77.5%
2jzkA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.54 43.0 3.69e-01 100.0% 70.9%
4hhvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 43.0 3.54e-01 94.1% 48.5%
1gqyB02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.54 38.0 2.50e-01 88.2% 18.0%
3h74A00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.53 43.0 2.84e-01 100.0% 28.8%
4ok4A02 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.53 41.0 2.63e-01 98.0% 26.9%
3jbtA05 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 42.0 2.69e-01 100.0% 21.2%
1noyA01 3.30.342.10 Alpha Beta › 2-Layer Sandwich › DNA Polymerase; Chain A, domain 1 › DNA Polymerase, chain B, domain 1 0.52 40.0 3.10e-01 88.2% 65.7%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 37.0 3.50e-01 78.4% 100.0%
1lomA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.51 36.0 3.03e-01 100.0% 38.6%
ECOD (77)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4215372 318.1.1.1 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.78 65.0 5.16e-01 100.0% 45.7%
3289877 394.1.1.1 few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.72 61.0 6.16e-01 96.1% 98.0%
4433757 3347.1.1.3 beta meanders › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › RHS_repeat, DUF6531 0.71 45.0 2.58e-01 70.6% 7.0%
3407218 394.1.1.1 few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.70 58.0 5.73e-01 96.1% 89.1%
44680 77.1.1.1 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › Lipoprotein_1 0.69 45.0 3.67e-01 90.2% 35.8%
3405285 394.1.1.0 few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins 0.68 56.0 4.97e-01 98.0% 63.7%
5067191 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.68 55.0 4.82e-01 92.2% 70.0%
5010537 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.67 55.0 4.91e-01 98.0% 74.7%
3239992 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.67 55.0 3.82e-01 96.1% 30.3%
4255589 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.67 55.0 4.43e-01 92.2% 79.0%
5042256 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.67 55.0 4.53e-01 96.1% 60.6%
4370025 318.1.1.1 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.66 56.0 4.53e-01 100.0% 50.5%
3507420 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 50.0 4.15e-01 84.3% 84.2%
4537528 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 42.0 3.80e-01 88.2% 47.1%
3427055 5.1.11.13 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › Beta-prop_RIC1_2nd 0.65 53.0 2.97e-01 96.1% 13.6%
3249214 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.64 48.0 3.70e-01 80.4% 59.2%
5038003 7089.1.1.0 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.64 42.0 4.33e-01 86.3% 70.0%
3410214 394.1.1.0 few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins 0.64 51.0 4.98e-01 96.1% 85.0%
3257384 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.64 48.0 3.78e-01 80.4% 70.0%
3883146 391.1.1.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.64 39.0 4.13e-01 90.2% 68.9%
3411639 394.1.1.1 few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.63 51.0 5.16e-01 94.1% 100.0%
5030451 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.63 53.0 4.36e-01 100.0% 53.3%
5073475 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.63 46.0 2.87e-01 80.4% 90.6%
3626212 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.63 45.0 3.27e-01 78.4% 40.6%
3892091 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 50.0 3.58e-01 100.0% 33.7%
5022798 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.62 52.0 3.00e-01 92.2% 10.4%
4962375 2484.1.1.49 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hydant_A_N 0.62 47.0 3.50e-01 82.4% 82.2%
1148160 2484.1.1.23 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hydantoinase_A 0.62 48.0 3.80e-01 86.3% 60.9%
4986651 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.62 49.0 4.38e-01 90.2% 68.0%
4028996 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 45.0 3.41e-01 84.3% 37.9%
4041551 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.62 47.0 3.66e-01 86.3% 46.7%
1877618 330.15.1.1 a+b two layers › dsRBD-like › VtrA protein periplasmic domain › VtrA protein periplasmic domain › VtrA_C 0.62 44.0 3.78e-01 90.2% 44.4%
4432262 319.1.1.3 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.61 51.0 4.01e-01 100.0% 65.0%
5065013 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.61 35.0 2.49e-01 90.2% 17.5%
3742788 319.1.1.3 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.61 50.0 4.13e-01 100.0% 62.9%
3271259 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.61 51.0 4.39e-01 98.0% 90.6%
3754695 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.60 49.0 3.89e-01 100.0% 48.0%
3222053 2484.1.1.200 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.60 46.0 3.09e-01 86.3% 45.8%
4526577 5.1.3.2 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Ldl_recept_b 0.60 51.0 3.27e-01 98.0% 27.2%
3934850 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 50.0 3.95e-01 100.0% 64.2%
5022090 2484.1.1.144 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DEDD_Tnp_IS110 0.60 48.0 3.70e-01 90.2% 60.0%
4079885 274.1.1.25 a+b two layers › Pili subunits › Pili subunits › Pili subunits › ComGF 0.60 47.0 4.06e-01 98.0% 72.6%
4236717 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.60 43.0 3.41e-01 84.3% 34.2%
223811 3583.1.1.1 few secondary structure elements › FusB family Zn-binding domain › FusB family Zn-binding domain › FusB family Zn-binding domain › FBP_C 0.59 43.0 3.38e-01 82.4% 59.5%
5004469 212.1.1.0 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.59 46.0 3.13e-01 90.2% 61.5%
4204975 12.3.1.14 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Hepar_II_III 0.58 47.0 2.94e-01 100.0% 27.3%
3574409 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.57 46.0 3.89e-01 92.2% 76.7%
3924597 330.16.1.0 a+b two layers › dsRBD-like › ODA16 N-terminal domain › ODA16 N-terminal domain 0.57 46.0 4.19e-01 92.2% 97.1%
3967128 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.57 40.0 3.72e-01 84.3% 55.7%
3164555 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.57 45.0 3.31e-01 90.2% 89.3%
3302660 109.4.1.1256 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3 0.56 47.0 3.17e-01 98.0% 30.9%
3971108 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 43.0 3.66e-01 86.3% 95.6%
1678591 705.1.1.1 beta duplicates or obligate multimers › Cyanovirin-N › Cyanovirin-N › Cyanovirin-N › CVNH 0.56 39.0 3.90e-01 100.0% 71.7%
3619467 220.1.1.84 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_15 0.56 45.0 3.67e-01 96.1% 75.5%
4001239 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 48.0 3.97e-01 100.0% 84.2%
5044666 101.1.8.2 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Topoisom_I 0.56 42.0 3.12e-01 86.3% 48.8%
4236900 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.56 42.0 3.19e-01 84.3% 32.6%
3410503 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 46.0 3.52e-01 96.1% 73.1%
3237475 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.55 44.0 3.95e-01 92.2% 88.5%
3934183 214.1.1.9 a+b two layers › SH2 › SH2 › SH2 › DUF7063 0.55 44.0 3.51e-01 88.2% 55.2%
5015845 230.1.1.3 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › PTPS 0.55 44.0 3.08e-01 88.2% 56.4%
4165211 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.55 40.0 3.02e-01 82.4% 28.3%
3989353 9.9.1.1 beta barrels › Lipocalins/Streptavidin › Hypothetical protein YwiB › Hypothetical protein YwiB › DUF1934 0.55 44.0 3.41e-01 92.2% 48.8%
3969569 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.55 44.0 4.27e-01 94.1% 88.3%
3941442 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.55 41.0 3.16e-01 84.3% 32.8%
2728118 3239.1.1.1 alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 0.55 46.0 2.87e-01 98.0% 17.7%
3987919 274.1.1.25 a+b two layers › Pili subunits › Pili subunits › Pili subunits › ComGF 0.55 43.0 3.60e-01 100.0% 62.7%
11143 2484.1.1.34 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.55 41.0 2.51e-01 86.3% 24.8%
3940961 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.54 44.0 3.52e-01 90.2% 53.3%
3966428 2003.1.2.49 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2+FAD_binding_3 0.54 44.0 2.85e-01 96.1% 38.6%
4210618 3735.1.1.12 beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › RHS_repeat, DUF6531, TEN_YD-shell 0.54 41.0 2.44e-01 88.2% 50.3%
3290300 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.53 44.0 3.83e-01 98.0% 98.8%
3937472 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.53 42.0 3.36e-01 88.2% 43.8%
4209885 77.1.1.1 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › Lipoprotein_1 0.53 46.0 3.32e-01 100.0% 76.7%
4931496 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.53 43.0 3.38e-01 96.1% 74.2%
3599238 207.4.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like 0.52 39.0 2.91e-01 90.2% 31.8%
3979396 3454.1.1.4 beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like › HofP 0.51 39.0 3.48e-01 86.3% 58.7%
D2 high residues 195-278
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF26209.2 best Phage_phiTE_241_C 46.1 5.80e-12 90.5% 91.5%
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kw8A02 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.68 54.0 4.65e-01 86.9% 69.9%
3kq4B02 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.66 53.0 4.74e-01 86.9% 90.7%
2e7mA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 38.0 3.53e-01 88.1% 45.6%
6v55A01 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.65 51.0 4.69e-01 85.7% 90.2%
1rfmA02 3.30.1370.60 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, NADPH binding domain 0.64 51.0 3.84e-01 86.9% 79.1%
3pnrB00 2.60.40.2020 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 48.0 4.18e-01 86.9% 79.8%
1wtjA02 3.30.1370.60 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, NADPH binding domain 0.60 47.0 3.71e-01 88.1% 84.8%
4ak2A01 2.60.40.2720 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 40.0 3.57e-01 88.1% 49.6%
1x99A00 2.60.270.20 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › Cytolysin/lectin 0.58 40.0 3.36e-01 97.6% 42.1%
4a18P00 3.30.720.90 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.56 31.0 3.52e-01 79.8% 71.2%
2zotC00 2.60.40.4060 Mainly Beta › Sandwich › Immunoglobulin-like › Reeler domain 0.55 40.0 3.51e-01 79.8% 70.7%
2nncA00 2.60.40.2470 Mainly Beta › Sandwich › Immunoglobulin-like › SoxY domain 0.54 40.0 3.70e-01 78.6% 60.0%
3nwsA01 2.40.50.800 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 46.0 3.89e-01 96.4% 92.2%
4x83A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 36.0 3.66e-01 79.8% 71.6%
4fe9A03 2.60.40.3620 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 47.0 4.34e-01 100.0% 98.2%
4bfeC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 37.0 3.45e-01 73.8% 76.4%
3fn9C04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 33.0 3.30e-01 85.7% 59.8%
2c9jA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.50 40.0 3.06e-01 88.1% 97.7%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5032743 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 38.0 3.71e-01 83.3% 50.5%
5043373 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.65 52.0 4.59e-01 85.7% 89.2%
3855060 10.4.1.0 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.65 52.0 4.57e-01 88.1% 83.2%
3458301 1.1.11.5 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › At2g31720-like 0.64 44.0 3.81e-01 70.2% 89.2%
3804101 1.1.11.5 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › At2g31720-like 0.63 43.0 3.65e-01 70.2% 87.9%
3916660 10.4.1.22 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB_CDCP1_2 0.63 51.0 4.46e-01 89.3% 80.8%
5058344 276.1.1.1 a+b three layers › L-sulfolactate dehydrogenase-like › L-sulfolactate dehydrogenase-like › L-sulfolactate dehydrogenase-like › Ldh_2 0.63 49.0 3.36e-01 86.9% 62.2%
3901017 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 39.0 3.68e-01 84.5% 53.0%
3328146 1.1.11.5 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › At2g31720-like 0.61 42.0 3.66e-01 71.4% 91.9%
4024284 11.1.1.162 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Inhibitor_I71 0.60 47.0 4.09e-01 86.9% 79.4%
3548304 11.1.1.97 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.59 48.0 4.60e-01 91.7% 86.0%
3202341 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.58 52.0 3.71e-01 97.6% 42.0%
3201338 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.58 53.0 3.78e-01 98.8% 48.1%
3892939 10.32.1.229 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF27640 0.58 47.0 4.08e-01 92.9% 87.1%
4029290 3156.3.1.2 beta sandwiches › Cupredoxin-like › Surface antigen 1 (SAG1)-related-sequence (SRS) family › Surface antigen 1 (SAG1)-related-sequence (SRS) family › s48_45 0.53 41.0 3.66e-01 86.9% 94.6%
3576330 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 39.0 3.37e-01 91.7% 49.6%
4939419 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.53 37.0 3.70e-01 94.0% 71.8%
5029878 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 39.0 3.63e-01 78.6% 65.7%
3200827 2008.1.1.143 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF7924 0.51 41.0 2.88e-01 89.3% 88.7%
3996412 11.1.1.589 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › NUP210_Ig 0.51 35.0 2.96e-01 70.2% 60.0%
3902022 11.1.1.179 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.51 37.0 3.32e-01 77.4% 55.8%
3412290 11.1.1.97 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.50 36.0 3.48e-01 77.4% 64.0%
3525469 11.1.1.64 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ICAM_N 0.50 35.0 3.57e-01 78.6% 72.9%
3856293 11.1.1.179 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.50 36.0 3.11e-01 78.6% 46.7%
2582567 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 37.0 3.47e-01 78.6% 77.9%
D3 medium residues 20-89
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ednA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.56 32.0 2.60e-01 70.0% 29.1%
1k28D04 3.30.1920.40 Alpha Beta › 2-Layer Sandwich › Phage tail proteins - 2 layer sandwich fold › 0.55 37.0 3.87e-01 71.4% 100.0%
1dt9A01 3.30.960.10 Alpha Beta › 2-Layer Sandwich › Translation, Eukaryotic Peptide Chain Release Factor Subunit 1; Chain A › eRF1 domain 1 0.55 37.0 3.25e-01 70.0% 81.9%
2jkgA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.53 38.0 2.92e-01 75.7% 72.7%
6w1kA01 3.10.180.50 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 0.50 39.0 2.66e-01 88.6% 39.7%
2vt8A00 3.40.1000.30 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › 0.50 35.0 2.76e-01 72.9% 55.9%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2028351 716.1.1.3 beta duplicates or obligate multimers › Trimeric autotransporter adhesin Trp ring domain › Trimeric autotransporter adhesin Trp ring domain › Trimeric autotransporter adhesin Trp ring domain › Hia_Tpr_ring_dom 0.59 40.0 4.64e-01 84.3% 98.0%
3510111 391.1.1.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.58 35.0 3.87e-01 75.7% 78.2%
4952606 2003.6.1.1 a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.52 36.0 2.40e-01 72.9% 31.9%
4974130 210.1.1.0 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits 0.50 35.0 2.37e-01 72.9% 82.3%