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OR003941.1__WKW35132.1__X__00035

Bact-Vir

OR003941.1__WKW35132.1__X__00035

Identity

Accession:
OR003941 ↗
Kingdom:
phage

Quality

91.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Phage_DSL-LC06

TaxID: 3058960

Cluster

View cluster (14 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 43-97
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4nkwA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.60 50.0 3.00e-01 100.0% 40.1%
3qthB00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.58 41.0 3.00e-01 92.7% 25.6%
4zxwB01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.56 45.0 3.28e-01 100.0% 30.2%
1dqnA00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 47.0 3.14e-01 98.2% 45.7%
1xjcA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 34.0 2.61e-01 83.6% 24.3%
2nn5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 45.0 3.30e-01 100.0% 100.0%
4mbsA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.54 41.0 2.60e-01 87.3% 52.3%
3oqgA00 3.40.1440.50 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › 0.53 43.0 3.17e-01 100.0% 37.5%
2e3tB03 3.30.43.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 0.53 32.0 3.13e-01 87.3% 49.2%
4l80D00 3.20.20.60 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains 0.52 37.0 2.31e-01 92.7% 12.2%
5t3dA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.52 43.0 3.16e-01 100.0% 59.4%
2w01B00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.52 42.0 2.94e-01 94.5% 26.4%
5ttjA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 41.0 2.76e-01 87.3% 96.4%
3oduB01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.52 42.0 2.82e-01 100.0% 79.8%
1u0mA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.51 43.0 3.23e-01 98.2% 65.1%
6uvuA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 42.0 3.49e-01 96.4% 86.5%
1bvyB00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.50 40.0 2.50e-01 100.0% 77.2%
4by6D02 1.25.40.800 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.50 41.0 2.86e-01 100.0% 75.6%
2e55A00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 34.0 2.36e-01 70.9% 68.3%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3932590 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 45.0 2.66e-01 83.6% 19.4%
3933800 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 45.0 2.82e-01 81.8% 28.2%
4983405 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.58 43.0 3.10e-01 80.0% 68.7%
3748248 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.58 44.0 2.80e-01 87.3% 40.3%
5018003 4040.1.1.1 ↗ alpha bundles › Fic-like › Fic-like › Fic-like › Fic 0.58 48.0 3.01e-01 94.5% 18.7%
3566423 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.57 39.0 2.64e-01 70.9% 26.0%
4003744 5067.1.1.3 ↗ alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Patched 0.57 47.0 2.65e-01 100.0% 52.7%
4932485 3261.1.1.0 ↗ a+b two layers › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb 0.57 42.0 4.20e-01 89.1% 81.8%
4422597 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.57 45.0 2.84e-01 92.7% 39.7%
3986582 327.16.1.3 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Secretin_N 0.56 40.0 3.14e-01 100.0% 33.1%
3581883 5048.1.1.0 ↗ alpha complex topology › Aquaporin-like › Aquaporin-like › Aquaporin-like 0.56 36.0 2.57e-01 87.3% 20.6%
3214395 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.56 39.0 2.52e-01 76.4% 41.3%
4955128 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.55 40.0 3.07e-01 80.0% 77.8%
3493263 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.55 43.0 2.80e-01 94.5% 42.9%
3901998 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.55 41.0 2.66e-01 87.3% 37.8%
3922539 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.55 41.0 2.68e-01 87.3% 42.4%
3473259 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.54 41.0 2.58e-01 87.3% 39.1%
4961292 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.54 30.0 2.75e-01 100.0% 40.0%
3703396 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.54 42.0 2.89e-01 90.9% 28.4%
4968601 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 39.0 3.21e-01 78.2% 46.7%
3571482 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.54 40.0 2.58e-01 87.3% 39.7%
3518601 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.53 38.0 2.71e-01 80.0% 27.7%
3240839 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.53 37.0 2.33e-01 74.5% 19.7%
3968281 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.52 41.0 2.88e-01 100.0% 80.4%
5039087 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.51 36.0 3.06e-01 78.2% 91.4%
3619859 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.51 38.0 3.00e-01 81.8% 44.2%
3999359 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.50 42.0 3.32e-01 98.2% 48.0%