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OR003941.1__WKW35141.1__X__00044
Bact-VirOR003941.1__WKW35141.1__X__00044
Identity
- Accession:
- OR003941 ↗
- Kingdom:
- phage
Quality
94.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-61
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2rkkA01 | 1.25.40.270 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Vacuolar protein sorting-associated protein vta1 | 0.69 | 49.0 | 3.62e-01 | 76.8% | 28.8% |
| 3uarA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.68 | 56.0 | 4.49e-01 | 92.9% | 46.7% |
| 1fznD00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 44.0 | 3.55e-01 | 78.6% | 74.1% |
| 4jvyB00 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.55 | 46.0 | 3.28e-01 | 100.0% | 84.7% |
| 4wu3A02 | 3.30.70.1690 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 37.0 | 3.18e-01 | 76.8% | 77.6% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3208701 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.72 | 55.0 | 3.55e-01 | 82.1% | 41.1% |
| 3706725 | 2484.1.1.109 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › bVLRF1 | 0.65 | 49.0 | 3.47e-01 | 82.1% | 63.3% |
| 3856326 | 5054.1.1.2 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans | 0.65 | 56.0 | 3.23e-01 | 92.9% | 14.9% |
| 3987571 | 2004.1.1.6 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran,oligo_HPY | 0.60 | 42.0 | 2.39e-01 | 83.9% | 6.3% |
| 3471773 | 7005.1.1.4 ↗ | a+b duplicates or obligate multimers › LUBAC-tethering domain › LUBAC-tethering domain › LUBAC-tethering domain › BRWD1_N | 0.58 | 36.0 | 3.57e-01 | 76.8% | 58.3% |
| 3917203 | 2003.1.5.14 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_3 | 0.58 | 49.0 | 3.18e-01 | 98.2% | 43.0% |
| 3583484 | 558.1.1.21 ↗ | alpha duplicates or obligate multimers › Lis-homology dimerization domain › Lis-homology dimerization domain › Lis-homology dimerization domain › BRWD1_N | 0.53 | 37.0 | 3.30e-01 | 92.9% | 48.2% |
| 4981807 | 378.1.1.9 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 | 0.50 | 41.0 | 2.97e-01 | 89.3% | 79.4% |
D2
medium
residues 69-150
Domain cluster:
rep: KX190832.1__ANT39960.1__BMBtpLA1_30__00030__D164-232
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1k28D03 | 2.40.30.150 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 | 0.65 | 44.0 | 4.23e-01 | 70.7% | 100.0% |
| 2cs0A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.61 | 41.0 | 3.97e-01 | 73.2% | 61.1% |
| 1luiA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.60 | 43.0 | 3.99e-01 | 76.8% | 63.0% |
| 1fguB02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.56 | 39.0 | 3.42e-01 | 72.0% | 85.5% |
| 1p0zA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.55 | 41.0 | 3.51e-01 | 78.0% | 100.0% |
| 1wxrA03 | 3.30.160.280 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.55 | 39.0 | 4.05e-01 | 75.6% | 81.6% |
| 2oap202 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 45.0 | 3.21e-01 | 98.8% | 57.0% |
| 1f89A00 | 3.60.110.10 | Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase | 0.52 | 44.0 | 3.10e-01 | 95.1% | 41.0% |
| 3dclA02 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.51 | 41.0 | 3.96e-01 | 85.4% | 79.1% |
| 4ywzB00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.50 | 36.0 | 3.09e-01 | 78.0% | 97.9% |
| 3vx8A02 | 3.40.140.70 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Ubiquitin-like modifier-activating enzyme ATG7 N-terminal domain | 0.50 | 40.0 | 3.32e-01 | 91.5% | 81.1% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3877571 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.62 | 46.0 | 4.11e-01 | 78.0% | 66.1% |
| 3793656 | 4.1.1.169 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF4819 | 0.61 | 42.0 | 3.48e-01 | 72.0% | 40.0% |
| 3892139 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.61 | 43.0 | 3.45e-01 | 75.6% | 41.8% |
| 3756543 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.59 | 43.0 | 3.46e-01 | 76.8% | 43.0% |
| 3979552 | 219.1.1.90 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF1287 | 0.59 | 43.0 | 3.37e-01 | 76.8% | 55.4% |
| 3926175 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 36.0 | 3.60e-01 | 92.7% | 58.8% |
| 4334982 | 3775.1.1.1 ↗ | beta barrels › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › CD36 | 0.58 | 42.0 | 2.75e-01 | 78.0% | 18.0% |
| 3196339 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.57 | 45.0 | 3.94e-01 | 86.6% | 76.9% |
| 1562389 | 3308.2.1.0 ↗ | beta duplicates or obligate multimers › periplasmic lysozyme inhibitor of I-type lysozyme-like › XAC2610 protein › XAC2610 protein | 0.57 | 46.0 | 3.53e-01 | 91.5% | 58.4% |
| 3924546 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.56 | 41.0 | 3.57e-01 | 78.0% | 58.5% |
| 4442017 | 246.3.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos | 0.55 | 41.0 | 2.94e-01 | 79.3% | 97.6% |
| 3338677 | 5.1.3.6 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 | 0.51 | 37.0 | 2.55e-01 | 78.0% | 80.0% |
| 3819893 | 5.1.4.288 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › APEH_N | 0.51 | 40.0 | 2.61e-01 | 87.8% | 78.9% |
| 3396363 | 3775.1.1.1 ↗ | beta barrels › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › CD36 | 0.51 | 44.0 | 2.81e-01 | 98.8% | 26.1% |
| 3238553 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.51 | 42.0 | 3.36e-01 | 96.3% | 52.4% |