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OR032571.1__WJZ48370.1__X__00180

Bact-Vir

OR032571.1__WJZ48370.1__X__00180

Identity

Accession:
OR032571 ↗
Kingdom:
phage

Quality

80.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Synechococcus_phage_DSL-LC02

TaxID: 3058947

Cluster

View cluster (51 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-41_67-92
PDB
Domain cluster: rep: IMGVR_UViG_3300032006_002050-3300032006-Ga0310344_100038483__D2-86
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3by7E00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.83 79.0 7.48e-01 98.5% 88.2%
4m7dA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.78 63.0 6.47e-01 97.0% 89.2%
4m78N00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.77 60.0 5.96e-01 98.5% 78.9%
1m5q101 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.77 62.0 6.23e-01 100.0% 85.3%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.76 60.0 5.55e-01 97.0% 67.5%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.76 59.0 6.34e-01 100.0% 96.6%
5mkiH00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.75 59.0 5.85e-01 95.5% 80.3%
4f7uG00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.74 63.0 6.30e-01 100.0% 89.7%
4c92A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 64.0 5.01e-01 100.0% 53.1%
4c92F00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.68 61.0 5.86e-01 100.0% 85.7%
1d3bB00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 59.0 5.59e-01 100.0% 88.9%
4dwpA02 1.10.443.30 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Telomere resolvase 0.59 50.0 3.49e-01 95.5% 35.7%
3e4wA02 2.40.180.10 Mainly Beta › Beta Barrel › Catalase HpII, Chain A, domain 1 › Catalase core domain 0.55 48.0 3.44e-01 100.0% 58.0%
1hpgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 41.0 3.63e-01 97.0% 54.5%
1boqA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 41.0 3.61e-01 85.1% 80.4%
4uhvA01 2.30.110.50 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.52 37.0 2.81e-01 80.6% 45.6%
4zciA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 40.0 3.58e-01 97.0% 58.4%
6ro0D00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 37.0 3.28e-01 80.6% 89.1%
3mb5A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.51 41.0 4.23e-01 98.5% 93.5%
5hmaA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 40.0 3.53e-01 98.5% 56.7%
1yloE02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.51 39.0 3.68e-01 98.5% 67.9%
1uv4A00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.50 42.0 2.84e-01 98.5% 39.9%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4813032 4.1.1.328 ↗ beta barrels › SH3 › SH3 › SH3 › Sm_like 0.82 78.0 7.28e-01 100.0% 84.8%
3783301 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 62.0 5.23e-01 98.5% 55.2%
2141114 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.74 59.0 5.77e-01 95.5% 79.2%
4029154 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 67.0 5.50e-01 100.0% 57.1%
3398219 4.1.1.89 ↗ beta barrels › SH3 › SH3 › SH3 › SM-ATX 0.71 63.0 5.54e-01 98.5% 67.4%
3277139 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.69 62.0 5.10e-01 100.0% 56.5%
3341533 4.1.1.89 ↗ beta barrels › SH3 › SH3 › SH3 › SM-ATX 0.68 61.0 5.43e-01 98.5% 77.9%
4030048 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.68 62.0 5.30e-01 100.0% 63.8%
3701868 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.68 63.0 5.61e-01 100.0% 74.4%
5064103 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.66 54.0 5.34e-01 97.0% 87.1%
4938385 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.66 54.0 5.20e-01 97.0% 78.8%
3580330 3519.1.1.0 ↗ beta complex topology › Myoferlin inner DysF domain › Myoferlin inner DysF domain › Myoferlin inner DysF domain 0.63 38.0 3.36e-01 98.5% 41.0%
4425420 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.62 55.0 5.10e-01 100.0% 81.2%
3718687 220.1.1.175 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_31 0.58 49.0 3.90e-01 98.5% 74.0%
3492554 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 48.0 4.26e-01 97.0% 95.0%
3997550 1.1.1.1 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp 0.57 43.0 3.41e-01 85.1% 41.9%
4033907 4.1.1.280 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4176 0.56 46.0 4.14e-01 95.5% 65.3%
3598658 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 48.0 3.69e-01 98.5% 82.3%
3514126 2.1.1.42 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C 0.56 47.0 3.70e-01 94.0% 87.9%
3969410 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.55 39.0 3.29e-01 85.1% 42.9%
3511043 896.1.1.0 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.54 43.0 3.65e-01 89.6% 66.9%
3389402 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 43.0 3.71e-01 94.0% 93.9%
1885538 242.4.1.0 ↗ a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain 0.53 38.0 3.34e-01 80.6% 71.6%
5037123 4252.1.1.0 ↗ beta barrels › AttH-like › AttH-like › AttH-like 0.52 40.0 3.32e-01 85.1% 53.8%
3561689 223.1.1.71 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › VGCC_alpha2 0.52 43.0 2.99e-01 94.0% 89.6%
3989019 1.1.7.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.52 42.0 3.61e-01 98.5% 54.5%
3538024 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.52 42.0 2.76e-01 92.5% 92.3%
5031837 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.51 43.0 2.99e-01 100.0% 51.3%
3970821 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.50 40.0 3.51e-01 98.5% 57.1%
3180144 7516.1.1.61 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Mannosyl_trans3 0.50 38.0 2.40e-01 83.6% 38.7%
5046173 4252.1.1.7 ↗ beta barrels › AttH-like › AttH-like › AttH-like › Tocopherol_cycl 0.50 43.0 3.44e-01 100.0% 86.9%
4165709 1.1.7.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.50 40.0 3.51e-01 98.5% 57.1%
D2 medium residues 42-66_93-118
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ztcA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.62 39.0 2.61e-01 98.0% 15.3%
1e7uA04 3.30.1010.10 Alpha Beta › 2-Layer Sandwich › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 4 › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 4 0.58 49.0 3.53e-01 98.0% 46.8%
5c3vA01 3.30.800.10 Alpha Beta › 2-Layer Sandwich › Phosphatidylinositol Phosphate Kinase II Beta › Phosphatidylinositol Phosphate Kinase II Beta 0.55 43.0 3.27e-01 100.0% 76.6%
5jciA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.55 36.0 3.00e-01 100.0% 39.3%
1dq3A03 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.52 42.0 3.69e-01 98.0% 73.6%
4wnoA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 44.0 3.76e-01 98.0% 77.0%
3fm8D03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 33.0 2.67e-01 100.0% 31.5%
1ocsA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.51 37.0 2.98e-01 100.0% 34.1%
2ab5A02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.51 43.0 3.25e-01 100.0% 46.3%
4efjA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.50 42.0 3.18e-01 100.0% 45.7%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3560459 391.1.2.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.59 38.0 4.02e-01 100.0% 75.6%
3788588 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 38.0 2.20e-01 100.0% 6.5%
3862816 391.1.2.1 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC 0.58 38.0 3.59e-01 100.0% 53.1%
3753991 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.58 38.0 3.94e-01 100.0% 75.6%
4931870 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.57 38.0 2.51e-01 70.6% 84.3%
4015057 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 42.0 3.54e-01 96.1% 58.0%
3399407 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 37.0 3.14e-01 100.0% 42.0%
3632463 192.6.1.0 ↗ alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain 0.51 44.0 3.41e-01 100.0% 44.2%
3578083 209.1.1.0 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like 0.51 41.0 3.14e-01 96.1% 92.8%
3928182 59.1.1.11 ↗ beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › Paf1 0.51 40.0 3.06e-01 92.2% 60.0%