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OR039881.1__WJJ54284.1__X__00018
Bact-VirOR039881.1__WJJ54284.1__X__00018
Identity
- Accession:
- OR039881 ↗
- Kingdom:
- phage
Quality
90.4
mean pLDDT
Taxonomy
TaxID: 3046621
Cluster
View cluster (5 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 160-252
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4bhqA00 | 3.30.70.2830 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 39.0 | 3.74e-01 | 92.5% | 54.1% |
| 7x7zA01 | 2.40.480.10 | Mainly Beta › Beta Barrel › AOC barrel-like › Allene oxide cyclase-like | 0.61 | 49.0 | 4.35e-01 | 88.2% | 100.0% |
| 4f3lA03 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.60 | 49.0 | 4.49e-01 | 89.2% | 92.6% |
| 3u2gA02 | 2.60.98.40 | Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › DU1608 C-terminal domain | 0.58 | 47.0 | 4.32e-01 | 91.4% | 96.1% |
| 3cm1A00 | 2.30.31.20 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB | 0.58 | 41.0 | 3.66e-01 | 74.2% | 69.9% |
| 5g5tA02 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.56 | 40.0 | 3.10e-01 | 73.1% | 68.6% |
| 1cv8A00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.56 | 37.0 | 3.07e-01 | 73.1% | 37.0% |
| 2r2zA00 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.56 | 43.0 | 4.46e-01 | 89.2% | 91.7% |
| 3djwA00 | 3.30.160.300 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.55 | 41.0 | 4.15e-01 | 88.2% | 77.9% |
| 2p4pA00 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.55 | 43.0 | 4.51e-01 | 89.2% | 91.7% |
| 4k00A00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.55 | 38.0 | 3.28e-01 | 96.8% | 48.2% |
| 3lidA03 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.54 | 42.0 | 4.24e-01 | 86.0% | 93.8% |
| 2p13A00 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.54 | 42.0 | 4.43e-01 | 84.9% | 95.3% |
| 3lp8A04 | 3.90.600.10 | Alpha Beta › Alpha-Beta Complex › Glycinamide Ribonucleotide Synthetase; Chain A, domain 4 › Phosphoribosylglycinamide synthetase, C-terminal domain | 0.53 | 36.0 | 3.68e-01 | 93.5% | 69.9% |
| 2oaiA00 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.53 | 40.0 | 4.29e-01 | 86.0% | 95.0% |
| 2ymsA00 | 2.40.128.630 | Mainly Beta › Beta Barrel › Lipocalin › | 0.53 | 35.0 | 3.24e-01 | 75.3% | 50.8% |
| 2x9aA00 | 2.30.27.10 | Mainly Beta › Roll › Phage FD Coat Protein, Membrane penetration domain › Phage FD Coat Protein,Membrane penetration domain | 0.53 | 33.0 | 3.82e-01 | 90.3% | 95.1% |
| 2vneA01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.53 | 46.0 | 3.87e-01 | 97.8% | 80.4% |
| 3ayhB01 | 3.30.1490.120 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RNA polymerase Rpb7-like, N-terminal domain | 0.53 | 41.0 | 4.34e-01 | 93.5% | 100.0% |
| 3v8uA04 | 2.40.160.90 | Mainly Beta › Beta Barrel › Porin › | 0.52 | 40.0 | 3.63e-01 | 87.1% | 81.6% |
| 3laeA00 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.51 | 40.0 | 4.25e-01 | 83.9% | 97.5% |
| 1v8cA02 | 3.30.1370.80 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Molybdopterin cofactor biosynthesis MoaD-related, C-terminal domain | 0.51 | 35.0 | 3.76e-01 | 88.2% | 82.5% |
| 2gk6A02 | 2.40.30.230 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.51 | 33.0 | 3.48e-01 | 82.8% | 72.3% |
| 4ge6A00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.51 | 34.0 | 2.42e-01 | 86.0% | 21.1% |
| 2nqwA00 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.51 | 40.0 | 4.16e-01 | 86.0% | 97.7% |
| 2pliA00 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.50 | 40.0 | 4.19e-01 | 86.0% | 95.2% |
| 3rbyA01 | 2.40.128.320 | Mainly Beta › Beta Barrel › Lipocalin › Protein HRI1, N-terminal domain | 0.50 | 39.0 | 3.46e-01 | 88.2% | 74.0% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4995639 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.62 | 38.0 | 4.04e-01 | 83.9% | 70.0% |
| 3701124 | 4252.1.1.1 ↗ | beta barrels › AttH-like › AttH-like › AttH-like › CrtC | 0.61 | 42.0 | 3.37e-01 | 71.0% | 88.4% |
| 5016827 | 5090.1.1.11 ↗ | beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › S_layer_N | 0.60 | 51.0 | 4.70e-01 | 93.5% | 95.0% |
| 4328622 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.57 | 41.0 | 3.89e-01 | 75.3% | 84.3% |
| 3239005 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.57 | 44.0 | 2.95e-01 | 83.9% | 82.0% |
| 3592095 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.57 | 39.0 | 3.54e-01 | 71.0% | 80.5% |
| 4496370 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.57 | 41.0 | 3.77e-01 | 76.3% | 80.0% |
| 3591038 | 886.1.1.0 ↗ | a+b duplicates or obligate multimers › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain | 0.57 | 39.0 | 3.43e-01 | 91.4% | 47.8% |
| 4015179 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.57 | 39.0 | 3.40e-01 | 95.7% | 45.5% |
| 3536856 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.57 | 48.0 | 4.08e-01 | 94.6% | 78.1% |
| 4552342 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.57 | 41.0 | 3.91e-01 | 76.3% | 87.3% |
| 3946118 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.56 | 34.0 | 3.69e-01 | 79.6% | 73.3% |
| 4399650 | 223.1.1.59 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › ArlS_N | 0.56 | 47.0 | 3.99e-01 | 98.9% | 76.6% |
| 4114061 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.56 | 40.0 | 3.84e-01 | 74.2% | 89.5% |
| 4159958 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.56 | 41.0 | 3.89e-01 | 76.3% | 86.4% |
| 3965861 | 1.1.7.129 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Rcc01698_C | 0.56 | 38.0 | 3.93e-01 | 86.0% | 74.4% |
| 4491659 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.56 | 40.0 | 3.79e-01 | 75.3% | 82.6% |
| 3250994 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.55 | 33.0 | 3.74e-01 | 86.0% | 83.1% |
| 4270573 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.55 | 39.0 | 3.78e-01 | 74.2% | 85.5% |
| 5014541 | 5090.1.1.11 ↗ | beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › S_layer_N | 0.55 | 45.0 | 4.23e-01 | 92.5% | 81.7% |
| 4678692 | 5090.2.1.2 ↗ | beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Immune inhibitor A metallopeptidase C-terminal domain › Immune inhibitor A metallopeptidase C-terminal domain › PF30934 | 0.55 | 45.0 | 3.52e-01 | 91.4% | 79.5% |
| 5043521 | 5090.1.1.0 ↗ | beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains | 0.55 | 44.0 | 4.00e-01 | 91.4% | 74.8% |
| 4937627 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 42.0 | 4.32e-01 | 84.9% | 98.9% |
| 5028249 | 5090.1.1.0 ↗ | beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains | 0.54 | 41.0 | 3.93e-01 | 84.9% | 97.4% |
| 3930154 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.53 | 42.0 | 3.59e-01 | 88.2% | 54.5% |
| 3592285 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.53 | 38.0 | 3.08e-01 | 76.3% | 77.9% |
| 3393249 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.53 | 36.0 | 2.54e-01 | 72.0% | 23.4% |
| 3899321 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.52 | 36.0 | 2.53e-01 | 73.1% | 27.6% |
| 3504606 | 5087.2.1.2 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1N › Lipovitellin LV-1N › PF29934 | 0.52 | 42.0 | 3.14e-01 | 95.7% | 79.3% |
| 4943640 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 40.0 | 3.66e-01 | 88.2% | 66.2% |
| 3806012 | 5.1.3.67 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 | 0.51 | 39.0 | 2.77e-01 | 86.0% | 99.1% |
| 4944225 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 42.0 | 3.68e-01 | 90.3% | 60.7% |
| 4680590 | 2.21.1.4 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › SSO2105_N | 0.50 | 43.0 | 3.41e-01 | 95.7% | 96.9% |
| 3475856 | 220.1.1.22 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C | 0.50 | 37.0 | 3.06e-01 | 81.7% | 46.3% |
D2
medium
residues 32-158_258-349
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05268.19 best | GP38 | 101.4 | 1.10e-28 | 94.1% | 99.5% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2yuhA01 | 2.160.20.70 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.72 | 35.0 | 3.96e-01 | 97.7% | 58.1% |
| 4oj5C04 | 2.160.20.130 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.59 | 39.0 | 4.28e-01 | 94.5% | 79.5% |
| 8tmsA01 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.58 | 44.0 | 3.99e-01 | 94.1% | 60.0% |
| 3bf0C03 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.54 | 35.0 | 3.94e-01 | 92.7% | 83.2% |
| 2p1mB02 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.50 | 36.0 | 2.74e-01 | 96.8% | 30.7% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3883960 | 207.1.1.130 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_5, LRR_8 | 0.68 | 39.0 | 3.68e-01 | 96.8% | 47.5% |
| 3260392 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.64 | 37.0 | 2.93e-01 | 98.2% | 28.7% |