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OR050627.1__WIC41316.1__MA9V1_052__00052
Bact-VirOR050627.1__WIC41316.1__MA9V1_052__00052
Identity
- Accession:
- OR050627 ↗
- Kingdom:
- phage
Quality
68.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 86-135
Domain cluster:
rep: MN850656.1__QHJ72935.1__X__00046__D66-113
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2xk0A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 46.0 | 4.18e-01 | 74.0% | 53.6% |
| 1kjzA03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.66 | 47.0 | 3.85e-01 | 78.0% | 41.3% |
| 6bhdA03 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 45.0 | 4.22e-01 | 76.0% | 58.7% |
| 4k8wA00 | 2.10.109.10 | Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A | 0.65 | 47.0 | 3.57e-01 | 78.0% | 68.6% |
| 2eqjA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 45.0 | 4.15e-01 | 74.0% | 59.1% |
| 4zgnB00 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.64 | 46.0 | 3.68e-01 | 78.0% | 37.9% |
| 3mp6A05 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 46.0 | 4.34e-01 | 78.0% | 65.1% |
| 1dm9A00 | 3.10.290.10 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain | 0.64 | 57.0 | 4.48e-01 | 100.0% | 54.8% |
| 1m1gB03 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 46.0 | 4.35e-01 | 82.0% | 66.7% |
| 7cfdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 47.0 | 4.18e-01 | 100.0% | 57.5% |
| 5kcoA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 45.0 | 4.31e-01 | 80.0% | 74.6% |
| 4ii1A02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 47.0 | 4.56e-01 | 100.0% | 76.8% |
| 1b23P03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.59 | 43.0 | 3.52e-01 | 78.0% | 50.0% |
| 5i7pA02 | 2.40.10.330 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.58 | 39.0 | 4.00e-01 | 72.0% | 72.9% |
| 1o9aA01 | 2.10.70.10 | Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 | 0.57 | 37.0 | 3.81e-01 | 76.0% | 75.0% |
| 1dusA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 37.0 | 2.60e-01 | 70.0% | 45.9% |
| 4aghA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.56 | 44.0 | 3.82e-01 | 100.0% | 56.2% |
| 3k44B00 | 3.30.2450.30 | Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › | 0.53 | 42.0 | 3.10e-01 | 100.0% | 32.1% |
| 2x10A01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.53 | 38.0 | 2.85e-01 | 84.0% | 91.4% |
| 3vpbE00 | 2.20.28.160 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.53 | 36.0 | 3.53e-01 | 98.0% | 66.1% |
| 1l8rA00 | 3.10.260.20 | Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Ski | 0.52 | 34.0 | 2.85e-01 | 86.0% | 32.7% |
| 2d8iA01 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.52 | 41.0 | 3.55e-01 | 94.0% | 75.0% |
| 2jhnA01 | 3.30.310.20 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain | 0.52 | 37.0 | 2.92e-01 | 100.0% | 34.5% |
| 7wa9A01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.52 | 44.0 | 3.24e-01 | 100.0% | 36.2% |
| 1eqnB01 | 3.90.980.10 | Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain | 0.52 | 41.0 | 3.25e-01 | 98.0% | 79.4% |
| 1v1pB02 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.51 | 34.0 | 3.13e-01 | 70.0% | 100.0% |
| 4joiA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.50 | 43.0 | 3.18e-01 | 100.0% | 45.4% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4949848 | 4.1.1.364 ↗ | beta barrels › SH3 › SH3 › SH3 › GatD_N | 0.69 | 48.0 | 4.69e-01 | 76.0% | 67.3% |
| 3866038 | 4.1.1.154 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF4772 | 0.67 | 49.0 | 4.06e-01 | 76.0% | 45.9% |
| 4668791 | 1.1.8.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C | 0.67 | 48.0 | 3.76e-01 | 78.0% | 36.2% |
| 5069810 | 1.1.8.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C | 0.67 | 46.0 | 3.98e-01 | 78.0% | 46.3% |
| 4952455 | 1.1.8.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C | 0.66 | 47.0 | 3.91e-01 | 78.0% | 42.7% |
| 3373330 | 4.1.1.337 ↗ | beta barrels › SH3 › SH3 › SH3 › CSD_RNase_II | 0.66 | 51.0 | 4.40e-01 | 82.0% | 90.7% |
| 4945827 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.66 | 47.0 | 3.89e-01 | 78.0% | 42.2% |
| 3304602 | 4.1.1.427 ↗ | beta barrels › SH3 › SH3 › SH3 › F-box | 0.66 | 47.0 | 3.80e-01 | 76.0% | 40.0% |
| 3602123 | 1.1.8.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C | 0.65 | 46.0 | 4.02e-01 | 78.0% | 48.7% |
| 3875218 | 4.1.1.128 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_4 | 0.65 | 45.0 | 4.18e-01 | 76.0% | 56.9% |
| 3503815 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.63 | 49.0 | 4.10e-01 | 100.0% | 49.4% |
| 3850775 | 4.1.1.101 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_2 | 0.63 | 46.0 | 4.29e-01 | 80.0% | 63.1% |
| 5078127 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.62 | 44.0 | 3.64e-01 | 74.0% | 88.2% |
| 4950268 | 284.4.1.0 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain | 0.62 | 44.0 | 4.22e-01 | 98.0% | 65.0% |
| 3359784 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.61 | 46.0 | 4.24e-01 | 98.0% | 63.1% |
| 3589736 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.61 | 42.0 | 3.82e-01 | 74.0% | 62.9% |
| 4191690 | 4.1.1.98 ↗ | beta barrels › SH3 › SH3 › SH3 › ProQ_C | 0.60 | 46.0 | 4.44e-01 | 98.0% | 72.4% |
| 4006298 | 284.1.1.0 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like | 0.60 | 45.0 | 4.44e-01 | 98.0% | 74.5% |
| 3821919 | 4.1.1.238 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 | 0.60 | 41.0 | 3.94e-01 | 74.0% | 61.7% |
| 4123274 | 284.4.1.0 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain | 0.59 | 41.0 | 4.01e-01 | 74.0% | 67.3% |
| 3230520 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.58 | 50.0 | 4.14e-01 | 100.0% | 54.4% |
| 5019949 | 4294.1.1.1 ↗ | few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Rieske | 0.58 | 40.0 | 3.29e-01 | 100.0% | 38.9% |
| 4966530 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.58 | 42.0 | 3.83e-01 | 80.0% | 65.7% |
| 3758536 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 40.0 | 3.67e-01 | 78.0% | 60.0% |
| 2036627 | 284.4.1.0 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain | 0.56 | 39.0 | 3.57e-01 | 76.0% | 53.5% |
| 4069543 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.56 | 46.0 | 4.06e-01 | 94.0% | 62.7% |
| 3513418 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.55 | 37.0 | 3.94e-01 | 72.0% | 80.0% |
| 3769507 | 4.1.1.31 ↗ | beta barrels › SH3 › SH3 › SH3 › Spin-Ssty | 0.54 | 40.0 | 3.62e-01 | 80.0% | 60.0% |
| 3492201 | 295.1.1.1 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PC4 | 0.54 | 43.0 | 3.89e-01 | 100.0% | 62.7% |
| 3449268 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 47.0 | 3.94e-01 | 100.0% | 69.4% |
| 3449739 | 207.1.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1 | 0.53 | 38.0 | 2.33e-01 | 100.0% | 10.6% |
| 3621613 | 3338.2.1.0 ↗ | a+b two layers › Fragilysin-3 prodomain-like › Type II secretion chaperone CpaB › Type II secretion chaperone CpaB | 0.50 | 42.0 | 3.33e-01 | 100.0% | 48.7% |
| 5065441 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.50 | 41.0 | 4.09e-01 | 100.0% | 86.8% |
| 4801232 | 216.1.1.5 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › BRE | 0.50 | 42.0 | 3.23e-01 | 100.0% | 42.3% |
D2
medium
residues 1-79