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OR061068.1__WKW35199.1__X__00056

Bact-Vir

OR061068.1__WKW35199.1__X__00056

Identity

Accession:
OR061068 ↗
Kingdom:
phage

Quality

72.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 226-324
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5yclA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.55 33.0 3.92e-01 100.0% 90.6%
3l5kA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.54 34.0 3.89e-01 100.0% 91.2%
6b9sB02 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.52 34.0 3.86e-01 94.9% 93.2%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3438235 509.1.1.1 alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH 0.58 38.0 4.35e-01 98.0% 95.7%
4546407 327.10.1.3 a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › DnaA_N 0.53 37.0 4.10e-01 100.0% 91.3%
4143913 327.10.1.3 a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › DnaA_N 0.52 34.0 3.77e-01 100.0% 88.0%
5078624 878.1.1.1 a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.51 40.0 4.03e-01 98.0% 82.9%
4667973 327.10.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related 0.51 35.0 3.87e-01 91.9% 93.3%
3233382 7515.1.1.12 a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › DUF229 0.51 44.0 3.04e-01 100.0% 78.7%
4192195 327.10.1.3 a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › DnaA_N 0.51 37.0 3.95e-01 100.0% 91.8%
4140196 327.10.1.3 a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › DnaA_N 0.51 36.0 3.83e-01 97.0% 89.4%
4426786 327.10.1.3 a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › DnaA_N 0.51 36.0 3.81e-01 100.0% 83.3%
4242993 327.10.1.3 a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › DnaA_N 0.50 37.0 3.88e-01 100.0% 91.8%
4612895 327.10.1.3 a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › DnaA_N 0.50 35.0 3.86e-01 100.0% 96.0%
D2 high residues 358-448
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13481.13 best AAA_25 32.1 1.20e-07 98.9% 42.6%
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1xx1A00 3.20.20.190 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphatidylinositol (PI) phosphodiesterase 0.67 58.0 4.08e-01 95.6% 55.8%
1f7uA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.61 55.0 3.68e-01 100.0% 94.5%
1a1vA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 53.0 4.64e-01 96.7% 81.5%
3olcX01 3.40.50.10190 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain 0.61 34.0 3.42e-01 87.9% 51.6%
3g2mA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.60 46.0 3.78e-01 95.6% 44.8%
5djsA03 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.60 43.0 3.54e-01 87.9% 40.5%
3lybC00 3.30.1330.40 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like 0.59 47.0 4.21e-01 87.9% 85.8%
3v4dB00 3.30.1330.40 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like 0.59 50.0 4.53e-01 94.5% 84.0%
1xknA00 3.75.10.10 Alpha Beta › 5-stranded Propeller › L-arginine/glycine Amidinotransferase; Chain A › L-arginine/glycine Amidinotransferase; Chain A 0.58 48.0 3.23e-01 90.1% 34.6%
5wt3A03 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.58 43.0 3.51e-01 97.8% 39.8%
7kgcA01 3.30.1330.40 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like 0.58 50.0 4.58e-01 97.8% 88.4%
2ewcB00 3.30.1330.40 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like 0.57 49.0 4.47e-01 94.5% 78.5%
3flkA00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.57 46.0 3.13e-01 89.0% 33.7%
1r6uA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.56 48.0 3.52e-01 96.7% 71.3%
3of5B00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 45.0 3.53e-01 100.0% 38.7%
4icsA01 3.40.1830.10 Alpha Beta › 3-Layer(aba) Sandwich › Thermophilic metalloprotease-like › Thermophilic metalloprotease (M29) 0.55 43.0 3.43e-01 83.5% 85.2%
4iilA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.55 39.0 3.23e-01 78.0% 39.0%
6d92A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.55 47.0 3.53e-01 98.9% 48.8%
3oc9A00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.54 49.0 3.20e-01 100.0% 27.8%
2o7rA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 45.0 3.23e-01 95.6% 79.5%
4obxA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 44.0 3.38e-01 95.6% 36.2%
3rkrA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 46.0 3.60e-01 100.0% 96.4%
3iprA00 3.40.50.510 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphotransferase system, mannose-type IIA component 0.54 46.0 4.06e-01 95.6% 90.5%
4w9nC02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 39.0 3.31e-01 95.6% 43.2%
5c5cA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 45.0 3.77e-01 95.6% 57.9%
3rotA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 46.0 4.07e-01 98.9% 83.9%
5hn3A00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.53 44.0 2.99e-01 91.2% 30.4%
1f0iA01 3.30.870.10 Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A 0.53 45.0 3.50e-01 97.8% 74.8%
4wzzA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.52 38.0 3.24e-01 80.2% 44.0%
3cs3A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.52 45.0 4.01e-01 98.9% 80.4%
2ymbA00 3.30.870.30 Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › MITD, C-terminal phospholipase D-like domain 0.52 43.0 3.76e-01 95.6% 57.5%
3brsA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.52 45.0 4.03e-01 98.9% 80.6%
1h3fA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.52 45.0 3.61e-01 100.0% 52.3%
2bfdB02 3.40.50.920 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 43.0 4.00e-01 97.8% 84.0%
1eluA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.51 45.0 3.29e-01 100.0% 45.8%
5by7A02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.51 41.0 3.59e-01 90.1% 69.9%
2wkbA01 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.51 36.0 3.61e-01 74.7% 99.0%
5tx7A02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 42.0 3.33e-01 90.1% 73.7%
4ru1A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.51 45.0 3.85e-01 98.9% 87.2%
4kq9A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.51 44.0 3.49e-01 98.9% 71.5%
3weeB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 41.0 3.46e-01 92.3% 78.4%
1gcaA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.51 44.0 3.71e-01 98.9% 72.0%
2rjoA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.51 44.0 3.61e-01 98.9% 67.6%
3hs3A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.51 32.0 2.86e-01 74.7% 42.0%
1oi2A02 3.30.1180.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › Dihydroxyacetone kinase; domain 2 0.50 41.0 3.49e-01 92.3% 77.2%
6hxqA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.50 41.0 3.74e-01 92.3% 88.4%
4cujA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.50 43.0 3.42e-01 97.8% 77.6%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5068261 2004.1.1.200 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_25 0.88 81.0 5.73e-01 97.8% 37.6%
4976818 2004.1.1.162 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 0.74 67.0 4.88e-01 100.0% 38.5%
5069956 2004.1.1.146 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase 0.72 65.0 4.59e-01 97.8% 50.4%
5067650 2004.1.1.146 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase 0.72 65.0 4.66e-01 97.8% 55.9%
3651937 2004.1.1.162 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 0.71 65.0 5.40e-01 100.0% 64.5%
4345012 2004.1.1.43 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SRP54 0.71 57.0 4.21e-01 94.5% 34.2%
3391393 2004.1.1.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.69 50.0 4.01e-01 76.9% 82.2%
3592083 2004.1.1.23 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom 0.68 59.0 4.05e-01 95.6% 41.2%
4095683 2004.1.1.226 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADDB_N 0.68 57.0 3.31e-01 90.1% 24.2%
4447276 2004.1.1.226 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADDB_N 0.67 56.0 3.85e-01 90.1% 57.3%
3586118 2004.1.1.30 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.66 53.0 4.07e-01 87.9% 91.0%
3258274 2007.1.2.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.65 55.0 4.60e-01 92.3% 100.0%
None 0.62 46.0 3.70e-01 79.1% 77.7%
4977362 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.61 46.0 3.76e-01 95.6% 42.3%
4028200 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.61 50.0 3.48e-01 90.1% 36.0%
4413120 7510.1.1.1 a/b three-layered sandwiches › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Iso_dh 0.60 49.0 3.95e-01 90.1% 67.8%
4028164 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.59 48.0 3.13e-01 90.1% 24.9%
3946229 2003.1.1.26 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Glyco_hydro_4 0.59 42.0 3.47e-01 92.3% 40.6%
1684449 2002.1.1.88 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PTE 0.58 51.0 3.51e-01 98.9% 45.7%
3594557 2496.1.1.0 a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like 0.58 47.0 3.71e-01 89.0% 73.5%
3730273 301.7.1.1 a+b three layers › Bacillus chorismate mutase-like › YjgF-like › YjgF-like › Ribonuc_L-PSP 0.58 47.0 4.26e-01 89.0% 80.0%
3429490 2004.1.1.56 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC 0.58 41.0 3.28e-01 74.7% 78.4%
3345189 2003.1.5.31 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GRAS 0.57 41.0 2.93e-01 76.9% 24.7%
None 0.57 48.0 3.75e-01 95.6% 55.2%
3972150 2004.1.1.156 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 0.57 48.0 3.53e-01 94.5% 89.2%
3453547 2484.1.1.110 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MULE 0.57 48.0 3.46e-01 95.6% 42.2%
3972461 301.7.1.1 a+b three layers › Bacillus chorismate mutase-like › YjgF-like › YjgF-like › Ribonuc_L-PSP 0.56 47.0 4.26e-01 94.5% 86.2%
None 0.56 46.0 3.10e-01 89.0% 75.0%
3958063 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 44.0 4.39e-01 87.9% 83.2%
4659910 2007.1.5.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like 0.56 39.0 3.37e-01 80.2% 45.3%
1382406 2007.1.2.5 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Bmp 0.55 39.0 3.53e-01 78.0% 51.9%
3181438 7590.1.1.7 a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › MID_MedPIWI 0.55 46.0 3.56e-01 97.8% 48.4%
3592422 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.54 45.0 3.05e-01 96.7% 23.0%
3946900 7523.1.1.0 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.53 35.0 3.34e-01 76.9% 57.1%
1253076 2007.1.2.10 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_3 0.53 46.0 4.16e-01 98.9% 83.7%
3683056 7590.1.1.7 a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › MID_MedPIWI 0.53 45.0 3.59e-01 100.0% 49.3%
3198428 2007.1.5.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like › Asp_Glu_race 0.52 45.0 3.67e-01 98.9% 72.2%
1593857 2007.1.2.11 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_4 0.51 44.0 3.98e-01 97.8% 83.6%
1669134 2003.1.1.37 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › 2-Hacid_dh_C 0.51 43.0 3.48e-01 94.5% 51.1%
3598525 2484.1.1.1 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.51 40.0 3.35e-01 86.8% 93.5%
3177077 2003.1.1.37 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › 2-Hacid_dh_C 0.51 42.0 3.31e-01 93.4% 45.2%
3960881 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 39.0 3.71e-01 83.5% 73.6%
3630159 2007.2.3.3 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Syja_N 0.51 44.0 3.13e-01 100.0% 45.8%
3580801 2007.9.1.0 a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain 0.51 40.0 3.50e-01 87.9% 86.2%
2443893 2007.1.2.11 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_4 0.50 43.0 3.73e-01 97.8% 79.6%
D3 medium residues 3-96
PDB
D4 medium residues 97-220
PDB