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OR062529.1__WIL79411.1__NWUPM118_109__00109
Bact-VirOR062529.1__WIL79411.1__NWUPM118_109__00109
Identity
- Accession:
- OR062529 ↗
- Kingdom:
- phage
Quality
86.8
mean pLDDT
Taxonomy
TaxID: 3051099
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-71
Domain cluster:
rep: OR515479.1__WNL63233.1__X__00266__D3-72
CATH (42)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.70 | 60.0 | 4.61e-01 | 98.6% | 43.7% |
| 3djcB01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.69 | 56.0 | 5.25e-01 | 92.9% | 80.7% |
| 3k7mX02 | 3.90.660.10 | Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › | 0.68 | 48.0 | 3.41e-01 | 74.3% | 38.8% |
| 3vmmA01 | 3.40.50.20 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.67 | 58.0 | 4.64e-01 | 95.7% | 86.7% |
| 4llgM00 | 3.10.20.510 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor | 0.66 | 44.0 | 4.84e-01 | 71.4% | 96.0% |
| 3zq5A03 | 3.30.450.270 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain | 0.66 | 45.0 | 3.54e-01 | 72.9% | 90.2% |
| 2jvfA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.66 | 55.0 | 5.10e-01 | 98.6% | 80.9% |
| 3tsnA00 | 3.40.718.10 | Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase | 0.65 | 52.0 | 3.27e-01 | 87.1% | 20.1% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.64 | 54.0 | 5.00e-01 | 98.6% | 78.3% |
| 4ehoB03 | 3.30.450.270 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain | 0.64 | 45.0 | 3.35e-01 | 74.3% | 95.0% |
| 6lpnA03 | 3.30.70.2190 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 42.0 | 3.62e-01 | 71.4% | 86.0% |
| 2iq1A00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.62 | 53.0 | 3.68e-01 | 100.0% | 59.1% |
| 2hiyA01 | 3.30.70.1280 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › SP0830-like domains | 0.62 | 44.0 | 4.12e-01 | 75.7% | 89.8% |
| 4jndA02 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.60 | 50.0 | 3.46e-01 | 100.0% | 54.3% |
| 4d8mA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.59 | 53.0 | 3.97e-01 | 100.0% | 42.9% |
| 2xzmE02 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.58 | 34.0 | 3.11e-01 | 72.9% | 43.2% |
| 2vugA02 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.58 | 41.0 | 4.13e-01 | 95.7% | 75.0% |
| 2v5yA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 46.0 | 4.09e-01 | 95.7% | 60.8% |
| 4iyqA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 39.0 | 3.51e-01 | 72.9% | 82.2% |
| 2iboA00 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 40.0 | 3.78e-01 | 74.3% | 84.3% |
| 1dgsA02 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.56 | 43.0 | 3.98e-01 | 85.7% | 72.6% |
| 3h20A01 | 3.30.1490.240 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain | 0.56 | 38.0 | 3.87e-01 | 71.4% | 74.2% |
| 1vj2A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.56 | 40.0 | 3.39e-01 | 75.7% | 50.9% |
| 4h0oA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.55 | 42.0 | 3.18e-01 | 98.6% | 32.6% |
| 1r9fA01 | 3.30.390.180 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › RNA silencing suppressor P19 | 0.54 | 46.0 | 4.04e-01 | 97.1% | 74.3% |
| 3ttcA01 | 3.90.870.30 | Alpha Beta › Alpha-Beta Complex › DHBP synthase › | 0.54 | 39.0 | 2.75e-01 | 75.7% | 37.6% |
| 6l4lA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.54 | 39.0 | 3.45e-01 | 91.4% | 49.1% |
| 4hadB02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.53 | 39.0 | 2.93e-01 | 81.4% | 88.2% |
| 3eyrA00 | 3.15.10.40 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Uncharacterised protein PF07273 family, DUF1439 | 0.53 | 42.0 | 3.21e-01 | 88.6% | 47.9% |
| 6v55A01 | 2.60.120.290 | Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain | 0.52 | 39.0 | 3.44e-01 | 100.0% | 51.8% |
| 3u1kC01 | 3.30.230.70 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain | 0.52 | 42.0 | 3.05e-01 | 92.9% | 54.4% |
| 4h32A02 | 3.90.209.20 | Alpha Beta › Alpha-Beta Complex › Hemagglutinin (Ha1 Chain); Chain: A; domain 1 › Haemagglutinin, alpha/beta domain, HA1 chain | 0.52 | 41.0 | 2.97e-01 | 100.0% | 28.2% |
| 1xteA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.52 | 47.0 | 3.96e-01 | 100.0% | 61.2% |
| 1vbkA01 | 3.30.70.1510 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › THUMP domain-like | 0.52 | 35.0 | 3.34e-01 | 70.0% | 96.4% |
| 3v10A02 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 43.0 | 3.56e-01 | 100.0% | 75.3% |
| 3pvlA02 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.51 | 45.0 | 4.07e-01 | 100.0% | 97.9% |
| 4p4tA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 40.0 | 2.72e-01 | 92.9% | 54.9% |
| 1e3hA03 | 3.30.230.70 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain | 0.51 | 41.0 | 3.03e-01 | 91.4% | 62.0% |
| 2pq0A02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.50 | 42.0 | 3.76e-01 | 92.9% | 82.0% |
| 2cfmA02 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.50 | 39.0 | 2.95e-01 | 90.0% | 88.6% |
| 2cs4A00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.50 | 43.0 | 3.94e-01 | 100.0% | 86.3% |
| 3fseA01 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.50 | 40.0 | 2.93e-01 | 88.6% | 92.9% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3661619 | 192.18.1.0 ↗ | alpha bundles › Long alpha-hairpin › MxiH-like › MxiH-like | 0.72 | 57.0 | 4.02e-01 | 87.1% | 44.4% |
| 3780458 | 223.2.1.51 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Njmu-R1 | 0.71 | 39.0 | 3.07e-01 | 100.0% | 25.9% |
| 5081134 | 3986.2.1.0 ↗ | a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd | 0.69 | 52.0 | 5.52e-01 | 94.3% | 95.0% |
| 3605629 | 2492.1.1.2 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB | 0.65 | 57.0 | 4.17e-01 | 98.6% | 46.2% |
| 4231372 | 4.1.1.307 ↗ | beta barrels › SH3 › SH3 › SH3 › PF26132 | 0.65 | 43.0 | 4.40e-01 | 70.0% | 100.0% |
| 4228966 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.63 | 42.0 | 3.68e-01 | 70.0% | 94.5% |
| 2042105 | 223.1.1.1 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PHY | 0.62 | 43.0 | 3.14e-01 | 74.3% | 90.2% |
| 5048876 | 3986.2.1.0 ↗ | a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd | 0.60 | 49.0 | 5.09e-01 | 100.0% | 98.5% |
| 3784871 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.59 | 40.0 | 3.73e-01 | 70.0% | 100.0% |
| 4655745 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.59 | 40.0 | 3.60e-01 | 70.0% | 97.0% |
| 3403757 | 210.2.1.1 ↗ | a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C | 0.59 | 49.0 | 3.14e-01 | 100.0% | 35.8% |
| 5022748 | 304.56.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 | 0.59 | 40.0 | 3.79e-01 | 72.9% | 80.0% |
| 3349141 | 375.1.1.182 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF7086 | 0.57 | 39.0 | 3.15e-01 | 71.4% | 72.9% |
| 3839021 | 304.56.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 | 0.57 | 40.0 | 3.67e-01 | 75.7% | 86.3% |
| 3310614 | 2008.1.1.146 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › EDRF1_N | 0.55 | 45.0 | 2.94e-01 | 91.4% | 59.1% |
| 4940035 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.55 | 49.0 | 4.21e-01 | 100.0% | 81.8% |
| 3988217 | 241.12.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › YktB/PF0168-like › YktB/PF0168-like | 0.55 | 43.0 | 3.14e-01 | 87.1% | 36.0% |
| 3699329 | 70.3.1.1 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SET | 0.54 | 43.0 | 2.71e-01 | 85.7% | 68.5% |
| 4956215 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.54 | 40.0 | 2.77e-01 | 77.1% | 67.3% |
| 4994897 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.53 | 48.0 | 3.84e-01 | 100.0% | 78.5% |
| 3831039 | 109.4.1.1599 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase | 0.53 | 45.0 | 2.63e-01 | 97.1% | 14.1% |
| 3982961 | 304.6.1.1 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C | 0.53 | 40.0 | 2.67e-01 | 80.0% | 37.4% |
| 3330921 | 109.4.1.1285 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, Eplus_motif, E_motif | 0.53 | 45.0 | 2.90e-01 | 100.0% | 27.2% |
| 3898409 | 221.1.1.76 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 | 0.52 | 45.0 | 4.07e-01 | 100.0% | 95.0% |
| 4931929 | 821.1.1.14 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF2797 | 0.52 | 41.0 | 3.80e-01 | 87.1% | 100.0% |
| 3648991 | 2492.1.1.39 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › DYW_deaminase | 0.52 | 45.0 | 3.73e-01 | 100.0% | 80.0% |
| 4666907 | 206.1.3.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DNA_ligase_A_M | 0.51 | 42.0 | 3.17e-01 | 98.6% | 87.3% |
| 5005349 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 41.0 | 2.57e-01 | 92.9% | 14.1% |
| 3379603 | 109.4.1.1383 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, Eplus_motif, E_motif | 0.51 | 43.0 | 2.50e-01 | 100.0% | 14.7% |
| 4982257 | 3662.1.1.4 ↗ | a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › PAC_bac | 0.51 | 35.0 | 3.07e-01 | 71.4% | 74.3% |
| 3965309 | 2004.1.1.220 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SWI2_SNF2 | 0.51 | 38.0 | 2.74e-01 | 81.4% | 39.1% |
| 4208835 | 221.1.1.113 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_3 | 0.51 | 44.0 | 3.80e-01 | 100.0% | 87.8% |
| 3260247 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.51 | 34.0 | 3.29e-01 | 70.0% | 90.4% |
| 3825377 | 109.4.1.1291 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif | 0.51 | 42.0 | 2.48e-01 | 95.7% | 16.7% |
| 3718648 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.50 | 40.0 | 3.55e-01 | 100.0% | 58.3% |
| 3242452 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.50 | 43.0 | 3.91e-01 | 100.0% | 100.0% |