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OR067833.1__WLW40889.1__GNAINCEL_00107__00107

Bact-Vir

OR067833.1__WLW40889.1__GNAINCEL_00107__00107

Identity

Accession:
OR067833 ↗
Kingdom:
phage

Quality

87.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lindbergviridae› Myosmarvirus› Serratia_phage_KKP_3709

TaxID: 3041363

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 5-50
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hbjA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.62 49.0 3.11e-01 91.3% 94.0%
3hh8A01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.57 46.0 3.40e-01 100.0% 96.6%
3ujpB01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.57 45.0 3.36e-01 100.0% 90.5%
1toaA01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.57 45.0 3.40e-01 100.0% 97.2%
1pq4A01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.54 43.0 3.17e-01 100.0% 89.5%
2ogwA01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.54 42.0 3.15e-01 100.0% 91.9%
4bl7A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 34.0 2.81e-01 71.7% 93.2%
1vp2A00 3.90.950.10 Alpha Beta › Alpha-Beta Complex › Maf protein › 0.51 40.0 2.79e-01 97.8% 90.5%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4975199 2003.1.2.29 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › NAD_binding_8 0.72 64.0 4.19e-01 100.0% 34.7%
4826000 2003.1.2.16 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.72 62.0 5.18e-01 100.0% 73.2%
None — 0.71 63.0 5.31e-01 100.0% 66.2%
2833603 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.71 62.0 5.28e-01 100.0% 66.2%
None — 0.63 54.0 3.25e-01 97.8% 65.5%
4972250 7509.1.1.1 ↗ a/b three-layered sandwiches › NIF3 (NGG1p interacting factor 3)-like › NIF3 (NGG1p interacting factor 3)-like › NIF3 (NGG1p interacting factor 3)-like › DUF34_NIF3 0.62 42.0 3.06e-01 71.7% 27.9%
5047875 7509.1.1.1 ↗ a/b three-layered sandwiches › NIF3 (NGG1p interacting factor 3)-like › NIF3 (NGG1p interacting factor 3)-like › NIF3 (NGG1p interacting factor 3)-like › DUF34_NIF3 0.62 42.0 3.08e-01 71.7% 28.9%
3966439 2007.1.14.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › ZnuA 0.60 49.0 3.59e-01 100.0% 96.0%
4569843 2007.1.14.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › ZnuA 0.57 45.0 3.45e-01 97.8% 98.5%
4929280 2007.1.14.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › ZnuA 0.57 44.0 3.25e-01 97.8% 93.5%
5005795 2007.1.14.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › ZnuA 0.56 45.0 3.34e-01 100.0% 91.0%
5038955 2007.1.14.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › ZnuA 0.55 44.0 3.36e-01 97.8% 98.5%
4933398 2007.1.14.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › ZnuA 0.55 44.0 3.29e-01 100.0% 95.9%
3970209 2007.1.14.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like 0.55 43.0 3.15e-01 100.0% 96.9%
4961140 7504.1.1.1 ↗ a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like 0.53 43.0 2.98e-01 100.0% 88.9%
D2 medium residues 62-96
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2af6A02 6.10.140.450 Special › Helix non-globular › Helix Hairpins › 0.65 43.0 3.52e-01 85.7% 35.5%
3qjlA02 3.30.70.1900 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 48.0 3.52e-01 100.0% 84.9%
3dv9A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.58 49.0 3.98e-01 100.0% 68.6%
1f2dA01 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 46.0 2.92e-01 100.0% 28.8%
3qwwA03 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.51 46.0 2.83e-01 100.0% 69.6%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3214928 7558.1.1.4 ↗ a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › DAGAT 0.59 43.0 2.50e-01 77.1% 28.5%
3374976 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.59 47.0 3.56e-01 88.6% 55.3%
3925064 148.1.1.7 ↗ alpha arrays › Histone-like › Histone-related › Histone › TAF 0.58 45.0 3.61e-01 85.7% 42.7%
4890746 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.58 41.0 3.64e-01 74.3% 50.0%
4970031 2007.1.2.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.56 42.0 2.66e-01 97.1% 14.9%
3971139 1045.1.1.0 ↗ alpha bundles › Rad50-binding domain of Mre11 › Rad50-binding domain of Mre11 › Rad50-binding domain of Mre11 0.55 46.0 4.20e-01 91.4% 68.9%