←Back to structures

OR067834.1__WLW40998.1__DPIBCGCG_00084__00083

Bact-Vir

OR067834.1__WLW40998.1__DPIBCGCG_00084__00083

Identity

Accession:
OR067834 ↗
Kingdom:
phage

Quality

81.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schitoviridae› Gamaleyavirus› Escherichia_phage_KKP_3715

TaxID: 3041360

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-90
PDB
Domain cluster: rep: MN098326.1__QFG06632.1__CPT_Myduc_009__00009__D5-70
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF23945.2 best DUF7279 64.6 7.80e-18 59.6% 98.1%
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1b7eA01 3.90.350.10 Alpha Beta › Alpha-Beta Complex › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 0.67 47.0 3.38e-01 89.9% 26.4%
3dbaA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.66 53.0 4.24e-01 86.5% 44.4%
4o01D01 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.64 53.0 4.05e-01 96.6% 38.6%
3hcyA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.64 57.0 4.80e-01 98.9% 60.0%
3f6gA02 3.30.160.340 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.64 43.0 4.88e-01 87.6% 98.4%
1nbwA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.64 41.0 3.64e-01 89.9% 43.9%
4nspA00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.62 44.0 3.25e-01 94.4% 27.7%
6oziB00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.62 45.0 3.29e-01 94.4% 28.2%
4g3wA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.62 49.0 4.25e-01 88.8% 55.5%
4akrA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.61 54.0 4.53e-01 98.9% 57.8%
1yeyA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.61 53.0 4.80e-01 96.6% 97.6%
3bxoA02 2.20.130.10 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains 0.60 35.0 4.18e-01 92.1% 86.4%
2q0oA01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.58 49.0 4.02e-01 93.3% 54.2%
4gw9A01 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.58 49.0 3.68e-01 92.1% 48.4%
4kwyA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.58 51.0 4.45e-01 98.9% 65.0%
3tesA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 30.0 2.98e-01 84.3% 46.8%
3pqvA02 3.30.360.20 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › RNA 3'-terminal phosphate cyclase, insert domain 0.57 43.0 4.23e-01 80.9% 95.8%
4lwoB02 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.55 44.0 3.54e-01 87.6% 95.7%
6pl6B01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.55 42.0 2.86e-01 83.1% 74.0%
5uaiA01 3.40.50.170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain 0.54 46.0 3.52e-01 100.0% 40.8%
3iq2A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.54 47.0 4.27e-01 97.8% 81.3%
3htxA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 36.0 3.83e-01 82.0% 80.3%
4glaC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 34.0 3.45e-01 87.6% 64.0%
3da8B00 3.40.50.170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain 0.53 47.0 3.64e-01 100.0% 44.9%
1cqkA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 43.0 4.12e-01 85.4% 83.2%
3p9xA00 3.40.50.170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain 0.53 46.0 3.59e-01 100.0% 44.1%
1cf9A01 2.40.180.10 Mainly Beta › Beta Barrel › Catalase HpII, Chain A, domain 1 › Catalase core domain 0.53 44.0 2.93e-01 92.1% 73.3%
2w59B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 42.0 3.89e-01 85.4% 79.8%
4ckmB00 2.170.210.20 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain 0.53 47.0 3.97e-01 97.8% 62.5%
1yc9A02 2.20.200.10 Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.52 42.0 4.38e-01 91.0% 95.2%
3d7jA00 3.30.479.10 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD 0.51 38.0 3.39e-01 88.8% 54.5%
3hpcX00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.50 44.0 3.74e-01 100.0% 80.6%
4be3A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 41.0 2.85e-01 89.9% 40.7%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4438376 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.76 49.0 4.39e-01 89.9% 48.3%
4098000 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.76 48.0 4.28e-01 91.0% 47.5%
4144742 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.69 43.0 3.92e-01 89.9% 47.5%
4218926 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.67 43.0 3.88e-01 89.9% 48.3%
3454249 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.67 45.0 4.24e-01 86.5% 58.1%
3952595 223.1.1.23 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_2 0.67 59.0 4.59e-01 96.6% 46.7%
3451695 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.66 46.0 4.68e-01 89.9% 72.2%
3950174 223.1.1.3 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.66 58.0 4.61e-01 95.5% 49.4%
5044528 2484.1.1.43 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.65 45.0 3.36e-01 82.0% 30.0%
3634956 2484.1.1.26 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Piwi 0.65 47.0 3.69e-01 94.4% 35.8%
3993341 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.64 46.0 4.71e-01 80.9% 77.6%
4940463 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.64 47.0 4.09e-01 93.3% 50.4%
3181609 223.2.1.29 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › DENND11 0.64 54.0 4.47e-01 91.0% 58.7%
3429580 2484.1.1.43 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.64 47.0 3.90e-01 91.0% 43.8%
3672774 2484.1.1.43 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.63 47.0 3.80e-01 91.0% 41.2%
4279828 504.1.1.1 ↗ a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › SecB 0.63 56.0 4.53e-01 98.9% 62.4%
3443030 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.62 45.0 4.71e-01 85.4% 83.7%
3928228 2484.1.1.43 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.62 45.0 3.35e-01 94.4% 28.7%
3445028 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.62 43.0 4.54e-01 89.9% 81.2%
5003854 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.61 39.0 3.67e-01 86.5% 50.4%
3193241 223.2.1.22 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Folliculin 0.61 50.0 4.45e-01 98.9% 61.5%
4972329 512.1.1.2 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.61 50.0 4.45e-01 93.3% 63.2%
165087 218.1.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.60 52.0 4.36e-01 96.6% 79.2%
3592232 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.59 44.0 3.14e-01 100.0% 25.4%
3957641 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.59 36.0 4.36e-01 76.4% 98.2%
3169953 2484.5.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase 0.59 42.0 3.55e-01 98.9% 41.8%
3719842 5.1.3.28 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 0.58 49.0 3.40e-01 92.1% 73.2%
3176331 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.58 42.0 3.52e-01 98.9% 41.8%
3526427 5084.5.1.2 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 0.58 45.0 3.06e-01 85.4% 66.6%
3285688 512.1.1.1 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.58 47.0 4.62e-01 93.3% 83.2%
3596299 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.57 47.0 4.43e-01 87.6% 76.2%
3959610 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.57 41.0 3.61e-01 75.3% 82.7%
3456535 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.57 46.0 4.31e-01 91.0% 70.9%
3177367 330.1.1.4 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Rad52_Rad22 0.56 51.0 4.23e-01 100.0% 65.2%
3427136 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 43.0 3.79e-01 80.9% 57.7%
3559120 220.1.1.173 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_CERK 0.56 40.0 3.64e-01 77.5% 55.8%
3955267 331.3.1.5 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.55 40.0 3.58e-01 77.5% 79.1%
4994607 512.1.1.2 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.55 43.0 3.97e-01 89.9% 65.2%
3269184 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 44.0 4.38e-01 92.1% 82.1%
3481274 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.54 45.0 4.00e-01 89.9% 64.5%
3183541 11.9.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › FAH › FAH › FAA_hydrolase 0.54 37.0 2.96e-01 73.0% 60.0%
3482064 331.3.1.3 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.53 43.0 3.60e-01 88.8% 51.3%
215919 2484.1.1.19 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1,Tnp_DNA_bind 0.52 45.0 2.84e-01 96.6% 18.7%
3654691 246.3.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.52 44.0 3.03e-01 94.4% 54.8%
3301111 331.3.1.25 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PaO 0.52 38.0 3.37e-01 78.7% 78.5%
3576653 330.1.1.3 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Dicer_dimer 0.51 39.0 3.58e-01 82.0% 68.7%
3488636 246.3.1.0 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like 0.51 43.0 3.06e-01 94.4% 82.5%
3654824 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.50 43.0 3.97e-01 96.6% 80.0%