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OR067837.1__WLW41277.1__LPEKDOOE_00192__00164

Bact-Vir

OR067837.1__WLW41277.1__LPEKDOOE_00192__00164

Identity

Accession:
OR067837 ↗
Kingdom:
phage

Quality

91.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Demerecviridae› Epseptimavirus› Salmonella_phage_KKP_3953

TaxID: 3041359

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-55
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4dciA00 6.10.140.1110 Special › Helix non-globular › Helix Hairpins › 0.93 87.0 6.15e-01 100.0% 38.1%
6xxvC00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.89 80.0 6.23e-01 100.0% 48.6%
3dwbA01 3.40.390.10 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) 0.88 65.0 3.95e-01 80.0% 13.7%
4m0mA04 1.20.1270.440 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.85 61.0 4.62e-01 76.4% 35.0%
4gzrC00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.84 68.0 6.57e-01 87.3% 82.0%
1wdzA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.82 74.0 4.78e-01 100.0% 25.5%
1qsdA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.81 73.0 5.86e-01 98.2% 52.9%
4uiqB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.81 58.0 4.17e-01 78.2% 27.5%
1b06A01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.75 60.0 5.61e-01 89.1% 70.1%
2gtsA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.74 62.0 5.63e-01 96.4% 70.1%
2qm8A03 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.74 59.0 5.57e-01 85.5% 86.2%
2lrmA00 1.10.890.30 Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › YmgD protein 0.70 39.0 3.37e-01 72.7% 35.7%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3582573 192.24.1.0 ↗ alpha bundles › Long alpha-hairpin › RPC62 helical hairpin domain › RPC62 helical hairpin domain 0.99 68.0 5.15e-01 70.9% 35.5%
4034213 632.2.1.5 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › DUF1542 0.96 80.0 6.88e-01 90.9% 60.0%
3416175 109.4.1.3528 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, ANAPC3, CHIP_TPR_N 0.95 90.0 5.84e-01 100.0% 27.5%
3579493 5054.1.1.0 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.94 88.0 6.88e-01 100.0% 53.3%
4562953 2004.1.1.43 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SRP54 0.94 88.0 5.34e-01 100.0% 19.3%
4235299 310.2.1.1 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF 0.92 85.0 5.70e-01 100.0% 29.9%
3717826 547.1.1.0 ↗ alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain 0.91 69.0 5.41e-01 80.0% 41.9%
3938243 3065.1.1.1 ↗ alpha bundles › Fatty acid- and retinoid-binding proteins › Fatty acid- and retinoid-binding proteins › Fatty acid- and retinoid-binding proteins › ANIS5_cation-bd 0.91 84.0 5.28e-01 100.0% 22.4%
3214189 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.90 76.0 5.99e-01 90.9% 47.6%
3930816 101.1.2.236 ↗ alpha arrays › HTH › HTH › winged helix domain › POLR3C_WHD 0.90 67.0 4.12e-01 80.0% 15.6%
3630104 192.24.1.6 ↗ alpha bundles › Long alpha-hairpin › RPC62 helical hairpin domain › RPC62 helical hairpin domain › RNA_pol_Rpc82, HTH_9, POLR3C_WHD 0.89 67.0 3.91e-01 80.0% 11.3%
3222805 5054.1.1.8 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.87 80.0 4.99e-01 100.0% 20.7%
3971072 5058.1.1.0 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.87 79.0 6.47e-01 100.0% 60.0%
3719935 164.1.1.0 ↗ alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II 0.86 72.0 5.82e-01 90.9% 53.0%
3298167 5086.1.1.62 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › XH 0.85 78.0 5.66e-01 100.0% 40.0%
4663108 109.3.1.165 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3, Ank_4, Ank_5 0.83 60.0 3.64e-01 80.0% 12.7%
None — 0.83 74.0 4.20e-01 96.4% 9.9%
4936252 5058.1.1.0 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.82 68.0 5.59e-01 100.0% 51.6%
4940986 5058.1.1.0 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.82 70.0 5.83e-01 96.4% 55.8%
1007309 633.6.1.1 ↗ alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA_dh_1 0.82 73.0 5.15e-01 100.0% 34.1%
3831 604.7.1.1 ↗ alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA 0.81 73.0 5.86e-01 98.2% 52.9%
5018387 604.18.1.0 ↗ alpha bundles › Spectrin repeat-like › Triple-helical domain in regulatory ATPase variant A (RavA) › Triple-helical domain in regulatory ATPase variant A (RavA) 0.78 62.0 4.94e-01 85.5% 62.9%
3839497 150.5.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.73 59.0 5.18e-01 92.7% 64.7%
4462775 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.72 61.0 4.99e-01 98.2% 50.5%
3442159 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.72 63.0 5.20e-01 96.4% 78.9%
1290319 109.4.1.244 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RPN6_N 0.72 45.0 2.74e-01 70.9% 10.7%
3735962 130.1.2.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › ribosome-binding domain of Mdm38 0.70 54.0 3.69e-01 85.5% 22.5%
4148347 101.1.1.26 ↗ alpha arrays › HTH › HTH › Three-helical HTH › UPF0122 0.66 52.0 4.33e-01 89.1% 51.0%
4928588 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 57.0 4.40e-01 98.2% 75.0%
3715395 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.60 52.0 4.80e-01 96.4% 75.7%