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OR067838.1__WLW41328.1__LJIJOHLM_00036__00036

Bact-Vir

OR067838.1__WLW41328.1__LJIJOHLM_00036__00036

Identity

Accession:
OR067838 ↗
Kingdom:
phage

Quality

83.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Phapecoctavirus› Escherichia_phage_KKP_3954

TaxID: 3041361

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 45-101
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ye6A01 1.10.8.1290 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1, domain 1 0.75 65.0 5.39e-01 100.0% 56.7%
2kebA00 1.10.8.530 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › DNA polymerase alpha-primase, subunit B, N-terminal domain 0.68 57.0 5.28e-01 100.0% 83.3%
7qhmE02 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.66 56.0 3.91e-01 94.7% 99.5%
2lrmA00 1.10.890.30 Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › YmgD protein 0.65 48.0 4.30e-01 80.7% 78.6%
5oklA01 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.60 46.0 3.81e-01 82.5% 56.4%
6zhiB02 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.57 41.0 3.79e-01 82.5% 81.9%
4usaA02 1.10.150.120 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › [2Fe-2S]-binding domain 0.56 44.0 3.58e-01 96.5% 43.7%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3517028 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.78 68.0 5.64e-01 100.0% 65.7%
4489811 103.17.1.0 ↗ alpha arrays › RuvA-C › HMG-CoA reductase flap domain › HMG-CoA reductase flap domain 0.77 56.0 5.88e-01 77.2% 88.0%
5052347 3317.1.1.0 ↗ alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain 0.73 62.0 6.27e-01 96.5% 100.0%
4020945 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.71 60.0 5.60e-01 100.0% 85.3%
3631300 3054.1.1.0 ↗ alpha arrays › Insert all-alpha domain in prim-pol › Insert all-alpha domain in prim-pol › Insert all-alpha domain in prim-pol 0.71 54.0 4.23e-01 87.7% 37.7%
3926727 170.1.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C 0.68 50.0 4.60e-01 80.7% 60.0%
4207615 170.2.1.28 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain › PNMA 0.67 46.0 4.45e-01 80.7% 63.1%
4423693 103.1.1.6 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C 0.66 47.0 4.84e-01 78.9% 85.5%
4359859 103.1.1.6 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C 0.65 47.0 4.93e-01 80.7% 90.0%
4641949 103.1.1.6 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C 0.62 48.0 4.99e-01 93.0% 100.0%
3630023 188.1.1.1 ↗ alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep 0.59 50.0 3.29e-01 98.2% 68.9%
3183328 103.12.1.13 ↗ alpha arrays › RuvA-C › ANTAR domain › ANTAR domain › DUF2015 0.54 45.0 4.36e-01 100.0% 83.1%
D2 high residues 112-214
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2i2lA01 2.10.70.50 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.63 32.0 4.17e-01 74.8% 94.2%
3c6kA01 3.30.160.110 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain 0.61 34.0 3.55e-01 92.2% 59.6%
1njhA00 2.70.180.10 Mainly Beta › Distorted Sandwich › Protein Yojf; Chain: A; › Hypothetical protein YojF 0.58 44.0 4.34e-01 100.0% 75.0%
3mzkB01 6.20.50.30 Special › Other non-globular › N-terminal domain of TfIIb › 0.58 23.0 3.31e-01 85.4% 86.8%
1fhoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 45.0 4.31e-01 100.0% 73.1%
3u6xS00 2.60.40.3320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 41.0 4.11e-01 100.0% 73.3%
3v8uA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.56 51.0 4.25e-01 100.0% 92.2%
4xpmB00 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.55 32.0 3.67e-01 90.3% 83.6%
3pvlA04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 37.0 3.85e-01 100.0% 72.7%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.55 41.0 4.10e-01 100.0% 77.9%
1skoA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.54 38.0 3.66e-01 94.2% 62.2%
3cm1A00 2.30.31.20 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB 0.54 46.0 4.19e-01 100.0% 69.9%
2xgrA00 3.40.570.10 Alpha Beta › 3-Layer(aba) Sandwich › Extracellular Endonuclease; Chain A › Extracellular Endonuclease, subunit A 0.53 38.0 3.16e-01 76.7% 60.4%
3h0gH00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 36.0 3.48e-01 70.9% 86.3%
7byjA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 37.0 3.81e-01 99.0% 78.9%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 42.0 4.11e-01 100.0% 81.8%
5hsqA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 37.0 3.46e-01 94.2% 59.7%
1ztuA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 39.0 3.47e-01 94.2% 55.0%
3d9wA02 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.51 43.0 4.34e-01 99.0% 95.1%
4zgnB00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 31.0 3.16e-01 92.2% 59.2%
2la7A01 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.51 46.0 4.26e-01 100.0% 89.8%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3670098 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.61 33.0 4.01e-01 86.4% 83.1%
3970579 219.1.1.18 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.58 33.0 2.91e-01 99.0% 38.0%
3798262 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 45.0 3.95e-01 100.0% 56.7%
3718648 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 38.0 3.79e-01 92.2% 65.7%
3560565 220.1.1.47 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_16 0.55 40.0 3.18e-01 100.0% 37.1%
3486278 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 40.0 4.06e-01 100.0% 76.2%
3767975 220.1.1.38 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › UCH_N 0.55 41.0 4.03e-01 100.0% 72.7%
3551920 11.1.1.640 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ZP-N 0.55 44.0 4.41e-01 88.3% 90.5%
3493294 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 39.0 3.51e-01 100.0% 53.1%
3797707 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 38.0 3.56e-01 100.0% 58.5%
3392311 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 39.0 3.41e-01 100.0% 49.7%
3263647 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 35.0 3.39e-01 100.0% 59.2%
4018116 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 37.0 3.53e-01 96.1% 63.6%
3567909 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 43.0 4.34e-01 94.2% 95.0%
3237220 220.1.1.84 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_15 0.52 42.0 4.11e-01 100.0% 80.9%
3390126 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 41.0 4.28e-01 88.3% 97.9%
3795297 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 38.0 3.76e-01 100.0% 71.9%
3587781 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 33.0 3.13e-01 97.1% 50.4%
3482507 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.50 45.0 2.96e-01 100.0% 92.5%
3211708 145.1.1.30 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › FBA_2 0.50 33.0 2.44e-01 97.1% 25.6%
3900377 220.1.1.41 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Sharpin_PH 0.50 40.0 3.80e-01 100.0% 71.2%
3715519 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 32.0 2.62e-01 92.2% 32.2%