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OR088597.1__WIW77295.1__CKA15_084__00068

Bact-Vir

OR088597.1__WIW77295.1__CKA15_084__00068

Identity

Accession:
OR088597 ↗
Kingdom:
phage

Quality

88.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Pecentumvirus› Listeria_phage_cka15

TaxID: 3053480

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-74
PDB
Domain cluster: rep: OL436245.1__UGL60525.1__X__00078__D2-65
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF23839.2 best DUF7209 55.2 6.40e-15 98.6% 90.9%
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 49.0 5.18e-01 97.2% 88.7%
2fr5A00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.66 47.0 3.80e-01 100.0% 39.0%
3ijfX00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.66 47.0 3.93e-01 100.0% 43.1%
3b8fB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.65 45.0 3.63e-01 100.0% 36.6%
1m5q101 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 48.0 4.93e-01 98.6% 82.4%
1r5tA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.65 46.0 3.72e-01 100.0% 38.3%
6l08A01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.64 47.0 3.69e-01 100.0% 36.4%
2z3gB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.63 46.0 3.81e-01 100.0% 43.3%
1konA02 3.30.70.980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain 0.63 39.0 3.70e-01 100.0% 50.0%
1cttA02 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.63 45.0 3.89e-01 100.0% 47.8%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.62 45.0 4.66e-01 98.6% 83.6%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 43.0 4.72e-01 97.2% 93.0%
4f7uF00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 48.0 4.76e-01 98.6% 82.2%
2jvuA00 2.60.40.2290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 38.0 3.49e-01 100.0% 48.0%
3e4vA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 43.0 3.24e-01 100.0% 31.6%
4c92B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 47.0 4.15e-01 98.6% 59.0%
2mvzA00 2.40.100.10 Mainly Beta › Beta Barrel › Cyclophilin › Cyclophilin-like 0.57 49.0 3.95e-01 100.0% 97.9%
4c92A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.57 47.0 3.87e-01 98.6% 50.0%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.56 43.0 3.75e-01 100.0% 54.1%
3obyA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.55 41.0 3.63e-01 97.2% 53.2%
1i7dA03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.55 48.0 3.89e-01 100.0% 90.8%
2fb7A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 47.0 4.61e-01 100.0% 90.0%
1ylnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 39.0 3.39e-01 100.0% 48.2%
1d3bB00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 48.0 4.62e-01 98.6% 86.4%
4bwxA03 1.10.287.3700 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.54 42.0 4.14e-01 88.7% 88.7%
1cyyA02 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.53 46.0 3.86e-01 100.0% 92.8%
1xvsA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.52 37.0 3.13e-01 100.0% 43.1%
2abjD02 3.20.10.10 Alpha Beta › Alpha-Beta Barrel › D-amino Acid Aminotransferase; Chain A, domain 2 › D-amino Acid Aminotransferase, subunit A, domain 2 0.52 39.0 3.10e-01 87.3% 81.7%
6dxwA01 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.51 38.0 2.69e-01 80.3% 99.1%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3588755 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 64.0 6.35e-01 100.0% 86.5%
4574546 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.72 52.0 5.41e-01 98.6% 83.1%
3598125 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 50.0 4.92e-01 98.6% 72.0%
3328647 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.69 51.0 4.83e-01 98.6% 65.9%
4018051 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.68 48.0 3.85e-01 100.0% 37.9%
4231372 4.1.1.307 ↗ beta barrels › SH3 › SH3 › SH3 › PF26132 0.67 57.0 5.73e-01 98.6% 97.1%
4282868 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.66 49.0 5.01e-01 98.6% 80.0%
3266139 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.66 47.0 3.75e-01 100.0% 37.9%
4350337 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.66 43.0 4.28e-01 100.0% 64.0%
5057963 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.66 48.0 3.80e-01 100.0% 37.9%
4448678 4.1.1.307 ↗ beta barrels › SH3 › SH3 › SH3 › PF26132 0.65 58.0 5.71e-01 100.0% 94.7%
5046680 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 40.0 3.63e-01 100.0% 46.3%
3290970 2492.1.1.45 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › PF26947 0.65 45.0 3.85e-01 100.0% 45.2%
4585632 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 43.0 3.82e-01 100.0% 49.0%
3588402 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 42.0 3.64e-01 100.0% 43.6%
5060437 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 40.0 3.63e-01 100.0% 47.4%
4096833 2492.1.1.15 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_2 0.64 46.0 3.96e-01 100.0% 47.8%
4956443 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 46.0 4.90e-01 94.4% 90.0%
4448380 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.63 46.0 3.87e-01 100.0% 45.8%
4958378 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.63 38.0 3.57e-01 100.0% 49.4%
4012760 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.63 46.0 3.54e-01 100.0% 34.6%
3017662 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.63 45.0 3.69e-01 100.0% 40.4%
400603 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.63 46.0 3.73e-01 100.0% 41.0%
3987425 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 43.0 3.62e-01 100.0% 44.3%
4969898 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 40.0 3.54e-01 100.0% 47.0%
3281945 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.61 49.0 4.53e-01 98.6% 67.8%
4547801 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 43.0 4.04e-01 98.6% 58.9%
4142960 2492.1.1.15 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_2 0.61 44.0 3.83e-01 100.0% 47.8%
4544770 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.61 46.0 3.69e-01 100.0% 41.4%
5044524 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 38.0 3.43e-01 100.0% 43.8%
184690 11.22.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Dispersin › Dispersin › CellEnv_BiogenAssoc 0.59 38.0 3.49e-01 100.0% 48.0%
4087011 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 49.0 4.47e-01 98.6% 68.4%
4113222 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.56 48.0 3.96e-01 100.0% 92.1%
3457163 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.54 40.0 3.85e-01 95.8% 70.0%
4318011 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.53 47.0 3.94e-01 100.0% 95.2%
4943741 221.6.1.0 ↗ a+b two layers › beta-Grasp › MM3350-like › MM3350-like 0.53 42.0 3.27e-01 90.1% 51.8%
4001350 9.15.1.1 ↗ beta barrels › Lipocalins/Streptavidin › TLDC domain of oxidation resistance protein 2 › TLDC domain of oxidation resistance protein 2 › TLD 0.53 47.0 3.39e-01 100.0% 65.5%
3736190 4.1.1.302 ↗ beta barrels › SH3 › SH3 › SH3 › tSH3-B_UBE2O 0.52 47.0 2.82e-01 100.0% 13.8%
4012112 251.1.1.0 ↗ a+b two layers › FYSH domain › FYSH domain › FYSH domain 0.52 43.0 4.12e-01 100.0% 100.0%
3750158 9.15.1.1 ↗ beta barrels › Lipocalins/Streptavidin › TLDC domain of oxidation resistance protein 2 › TLDC domain of oxidation resistance protein 2 › TLD 0.52 45.0 3.47e-01 100.0% 65.7%
3727915 251.1.1.1 ↗ a+b two layers › FYSH domain › FYSH domain › FYSH domain › SBDS 0.52 44.0 3.96e-01 100.0% 82.9%
3221153 9.15.1.1 ↗ beta barrels › Lipocalins/Streptavidin › TLDC domain of oxidation resistance protein 2 › TLDC domain of oxidation resistance protein 2 › TLD 0.52 45.0 3.40e-01 100.0% 70.3%
3507953 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 37.0 3.78e-01 100.0% 78.6%
4954871 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.51 44.0 3.81e-01 100.0% 97.4%
3223879 4970.1.1.0 ↗ alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.51 41.0 2.66e-01 88.7% 39.4%
3242794 4252.1.1.0 ↗ beta barrels › AttH-like › AttH-like › AttH-like 0.51 43.0 3.77e-01 100.0% 97.4%
5051952 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.51 44.0 3.88e-01 100.0% 99.1%
4301405 299.1.1.1 ↗ a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.50 45.0 3.40e-01 100.0% 42.4%