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OR088597.1__WIW77338.1__CKA15_127__00111

Bact-Vir

OR088597.1__WIW77338.1__CKA15_127__00111

Identity

Accession:
OR088597 ↗
Kingdom:
phage

Quality

58.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Pecentumvirus› Listeria_phage_cka15

TaxID: 3053480

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 325-422
PDB
D2 medium residues 49-142
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1y8cA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.68 41.0 4.96e-01 71.3% 95.0%
1wznA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.67 39.0 4.80e-01 92.6% 96.4%
5fgoA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 34.0 4.03e-01 71.3% 79.0%
1vprA03 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.62 49.0 4.07e-01 87.2% 49.7%
3q63F00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.62 50.0 4.36e-01 87.2% 59.0%
2xklA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 43.0 3.71e-01 75.5% 65.1%
1srqA01 3.30.1120.160 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.60 40.0 3.52e-01 90.4% 47.1%
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.59 45.0 3.67e-01 79.8% 60.8%
6m9yA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.59 29.0 3.51e-01 79.8% 73.7%
3hdjA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.59 40.0 3.48e-01 100.0% 46.4%
3esiA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.59 46.0 4.21e-01 84.0% 91.9%
5ay6A01 2.60.98.20 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Flagellar hook protein FlgE 0.58 45.0 3.70e-01 83.0% 76.6%
3apuB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 45.0 3.68e-01 83.0% 50.6%
5w17A01 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.57 45.0 3.84e-01 83.0% 86.7%
3bnvD00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.57 46.0 4.06e-01 89.4% 90.9%
1lkeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 41.0 3.54e-01 77.7% 46.5%
1uv4A00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.56 49.0 3.53e-01 98.9% 77.3%
2cm4A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 41.0 3.64e-01 84.0% 52.4%
2m89A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 43.0 3.88e-01 89.4% 61.2%
3zs7A00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.54 43.0 3.13e-01 87.2% 59.6%
1fuwA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 45.0 4.57e-01 100.0% 94.5%
3qkgA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 49.0 4.02e-01 98.9% 89.0%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 31.0 3.65e-01 89.4% 84.4%
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.53 46.0 4.09e-01 100.0% 65.5%
3gmvX00 3.10.450.730 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › BLIP domain 0.51 43.0 3.72e-01 94.7% 96.2%
4by6B00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.51 31.0 2.58e-01 84.0% 33.1%
1epaA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 46.0 3.86e-01 100.0% 89.4%
1luiA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.51 38.0 3.65e-01 79.8% 87.0%
6b9tF02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 37.0 3.60e-01 93.6% 68.8%
3b7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 44.0 4.08e-01 100.0% 99.2%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2549178 243.19.1.0 ↗ a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains 0.90 86.0 7.95e-01 100.0% 92.0%
4221174 243.19.1.0 ↗ a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains 0.78 69.0 6.94e-01 100.0% 94.7%
3246120 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.73 53.0 4.13e-01 75.5% 39.7%
2491359 243.19.1.0 ↗ a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains 0.72 67.0 5.87e-01 100.0% 72.1%
3096198 3692.1.1.0 ↗ a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain 0.65 43.0 4.15e-01 74.5% 59.3%
3218203 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.65 47.0 3.95e-01 75.5% 47.7%
3618632 2003.1.5.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.61 39.0 2.70e-01 93.6% 18.2%
4982249 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.60 38.0 3.86e-01 77.7% 63.2%
4992208 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.59 43.0 3.13e-01 75.5% 40.0%
3275758 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.59 47.0 3.00e-01 86.2% 23.6%
3261868 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.58 45.0 3.61e-01 80.9% 90.6%
3690464 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.58 49.0 3.92e-01 93.6% 67.2%
None — 0.58 51.0 3.57e-01 96.8% 98.6%
849 9.1.1.16 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.57 49.0 3.30e-01 93.6% 45.9%
4354418 9.1.1.16 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.57 49.0 2.92e-01 93.6% 23.0%
4960428 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.57 42.0 3.08e-01 77.7% 77.2%
4977257 2003.1.5.82 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 0.56 43.0 3.12e-01 79.8% 78.0%
4410498 222.1.1.10 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_3 0.56 46.0 4.11e-01 89.4% 88.9%
3802876 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.54 47.0 3.30e-01 96.8% 48.3%
3883246 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.54 49.0 4.04e-01 100.0% 86.5%
3608102 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.54 36.0 4.10e-01 80.9% 92.9%
3749122 5.1.3.176 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › APEH_N 0.53 47.0 3.14e-01 100.0% 51.5%
3282239 331.3.1.9 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 0.53 43.0 3.84e-01 88.3% 63.7%
3390746 5.1.3.19 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hira 0.53 47.0 3.80e-01 100.0% 74.1%
3817452 222.1.1.0 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.53 41.0 3.81e-01 83.0% 90.0%
3592202 2003.6.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like 0.53 41.0 2.99e-01 87.2% 62.0%
3230598 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.52 45.0 3.80e-01 92.6% 64.7%
3858387 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 45.0 2.73e-01 100.0% 34.7%
3997948 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.52 40.0 3.38e-01 95.7% 49.7%
3897847 216.1.1.2 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C 0.51 46.0 3.75e-01 96.8% 62.1%
4426077 241.1.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Autophagy_act_C 0.51 44.0 3.69e-01 92.6% 67.1%
4147439 243.3.1.55 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PF27063 0.51 40.0 3.94e-01 92.6% 79.8%
5042975 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.50 43.0 3.48e-01 97.9% 57.9%
3794870 216.1.1.2 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C 0.50 44.0 3.69e-01 96.8% 63.7%
D3 medium residues 210-298
PDB