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OR088901.1__WJZ27836.1__MOMMJLID_CDS0028__00028
Bact-VirOR088901.1__WJZ27836.1__MOMMJLID_CDS0028__00028
Identity
- Accession:
- OR088901 ↗
- Kingdom:
- phage
Quality
80.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 16-110
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1j78A05 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.77 | 37.0 | 4.58e-01 | 78.9% | 73.3% |
| 4ag6A02 | 1.10.8.730 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.67 | 41.0 | 3.88e-01 | 80.0% | 52.7% |
| 3uonA01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.64 | 46.0 | 3.35e-01 | 75.8% | 35.5% |
| 2zy9A03 | 1.10.357.20 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › SLC41 divalent cation transporters, integral membrane domain | 0.60 | 49.0 | 4.05e-01 | 89.5% | 50.6% |
| 4uiqB00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.59 | 46.0 | 3.95e-01 | 83.2% | 89.5% |
| 3eo8A00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.58 | 51.0 | 3.95e-01 | 100.0% | 68.9% |
| 4i8qA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.58 | 46.0 | 3.35e-01 | 90.5% | 72.5% |
| 3s84A02 | 1.20.120.20 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein | 0.56 | 47.0 | 4.03e-01 | 92.6% | 80.9% |
| 4mspB02 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.56 | 35.0 | 3.88e-01 | 76.8% | 78.7% |
| 3rm5B02 | 1.20.910.10 | Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like | 0.56 | 45.0 | 3.46e-01 | 87.4% | 69.2% |
| 7vwtA01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.56 | 42.0 | 2.96e-01 | 81.1% | 50.8% |
| 4ymuD00 | 1.10.3720.10 | Mainly Alpha › Orthogonal Bundle › MetI-like fold › MetI-like | 0.56 | 44.0 | 3.44e-01 | 86.3% | 89.8% |
| 1nzeA00 | 1.20.120.290 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Oxygen-evolving enhancer protein 3 (PsbQ), four-helix up-down bundle | 0.54 | 40.0 | 3.80e-01 | 92.6% | 66.1% |
| 2qvwA04 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.53 | 48.0 | 4.14e-01 | 100.0% | 73.8% |
| 3n3dB00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.53 | 44.0 | 3.07e-01 | 90.5% | 53.0% |
| 3c24A02 | 1.10.3640.10 | Mainly Alpha › Orthogonal Bundle › putative oxidoreductase fold › Semialdehyde dehydrogenase-like, C-terminal | 0.53 | 42.0 | 4.16e-01 | 96.8% | 82.0% |
| 3rv0C02 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.52 | 46.0 | 4.04e-01 | 97.9% | 66.0% |
| 3k6hA01 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.52 | 44.0 | 3.64e-01 | 91.6% | 84.4% |
| 2eb1C00 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.52 | 45.0 | 3.76e-01 | 97.9% | 65.7% |
| 4zqeA03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.50 | 35.0 | 3.50e-01 | 86.3% | 71.9% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5069130 | 6026.1.1.0 ↗ | alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain | 0.84 | 44.0 | 5.99e-01 | 86.3% | 100.0% |
| 3715403 | 190.1.1.0 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box | 0.69 | 40.0 | 4.86e-01 | 94.7% | 91.7% |
| 4319975 | 547.1.1.1 ↗ | alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer | 0.63 | 50.0 | 5.17e-01 | 94.7% | 88.9% |
| 4184996 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.63 | 51.0 | 3.58e-01 | 96.8% | 28.8% |
| None | — | 0.63 | 51.0 | 3.59e-01 | 96.8% | 29.8% | |
| 4417777 | 547.1.1.1 ↗ | alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer | 0.62 | 50.0 | 4.50e-01 | 96.8% | 63.1% |
| 1033128 | 194.1.1.2 ↗ | alpha complex topology › Serum albumin-like › Serum albumin-like › Serum albumin-like › VitD-bind_III | 0.61 | 36.0 | 4.17e-01 | 73.7% | 80.0% |
| None | — | 0.61 | 48.0 | 3.55e-01 | 97.9% | 31.8% | |
| None | — | 0.60 | 49.0 | 3.52e-01 | 97.9% | 30.5% | |
| None | — | 0.60 | 49.0 | 3.54e-01 | 97.9% | 31.1% | |
| 4327215 | 547.1.1.1 ↗ | alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer | 0.59 | 50.0 | 4.72e-01 | 98.9% | 75.7% |
| 4222581 | 547.1.1.1 ↗ | alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer | 0.59 | 48.0 | 4.56e-01 | 93.7% | 74.5% |
| 3854050 | 604.12.1.43 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Tim17 | 0.59 | 50.0 | 4.51e-01 | 94.7% | 82.2% |
| None | — | 0.58 | 46.0 | 3.44e-01 | 98.9% | 32.7% | |
| 4887412 | 2004.1.1.489 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ResIII, PF27431 | 0.55 | 48.0 | 3.28e-01 | 93.7% | 49.3% |
| 3981625 | 2004.1.1.549 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Exonuc_V_gamma, PF27451 | 0.54 | 43.0 | 2.52e-01 | 85.3% | 35.0% |
| 5062170 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.53 | 41.0 | 3.79e-01 | 81.1% | 86.7% |
| 4027661 | 592.1.1.1 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain › PWI | 0.51 | 41.0 | 3.89e-01 | 100.0% | 71.7% |
| 3613627 | 1188.1.1.1 ↗ | alpha bundles › ZIP zinc transporter › ZIP zinc transporter › ZIP zinc transporter › Zip | 0.50 | 45.0 | 3.17e-01 | 96.8% | 60.4% |
D2
high
residues 150-242
Domain cluster:
rep: S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00803__D8-94