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OR088901.1__WJZ27848.1__MOMMJLID_CDS0040__00040
Bact-VirOR088901.1__WJZ27848.1__MOMMJLID_CDS0040__00040
Identity
- Accession:
- OR088901 ↗
- Kingdom:
- phage
Quality
88.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 89-140
Domain cluster:
representative
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3keyA01 | 1.10.10.1080 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain | 0.80 | 59.0 | 4.89e-01 | 100.0% | 47.1% |
| 4jneA03 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.75 | 60.0 | 5.13e-01 | 100.0% | 53.4% |
| 3d2fA04 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.72 | 58.0 | 5.03e-01 | 100.0% | 57.1% |
| 4abmD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.70 | 46.0 | 4.01e-01 | 86.5% | 45.5% |
| 4i5sA01 | 1.10.8.500 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › HAMP domain in histidine kinase | 0.67 | 42.0 | 3.90e-01 | 80.8% | 50.8% |
| 2m4eA00 | 1.20.120.1930 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein PF16691 family | 0.67 | 57.0 | 4.89e-01 | 98.1% | 87.2% |
| 1e6cA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.66 | 50.0 | 3.51e-01 | 94.2% | 25.3% |
| 2yfqB03 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.66 | 51.0 | 3.79e-01 | 86.5% | 99.3% |
| 2gxaE01 | 1.10.10.510 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Zinc finger, large T-antigen D1 domain | 0.65 | 52.0 | 4.62e-01 | 86.5% | 61.6% |
| 3pmiA02 | 6.10.300.20 | Special › Helix non-globular › cAMP-dependent Protein Kinase, Chain A › | 0.63 | 43.0 | 4.46e-01 | 71.2% | 87.5% |
| 6me6B02 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.63 | 46.0 | 2.88e-01 | 86.5% | 14.6% |
| 3wvoC02 | 1.10.132.100 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › | 0.62 | 55.0 | 4.10e-01 | 100.0% | 89.2% |
| 1bvp103 | 1.10.170.10 | Mainly Alpha › Orthogonal Bundle › Bluetongue Virus 10, subunit 1; domain 3 › Bluetongue Virus 10, subunit 1, domain 3 | 0.62 | 51.0 | 4.22e-01 | 94.2% | 62.5% |
| 4hr1A00 | 1.20.1270.410 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.60 | 52.0 | 4.03e-01 | 98.1% | 93.2% |
| 2oxlA00 | 1.20.5.5260 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.60 | 43.0 | 4.14e-01 | 78.8% | 72.6% |
| 4hteA01 | 1.20.58.1730 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 47.0 | 3.37e-01 | 84.6% | 37.8% |
| 1qsmD00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.59 | 52.0 | 3.74e-01 | 100.0% | 34.2% |
| 2looA02 | 1.10.10.1740 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Transmembrane protein 14-like | 0.59 | 42.0 | 3.78e-01 | 88.5% | 53.3% |
| 5f4bA00 | 3.40.50.360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain | 0.59 | 53.0 | 3.64e-01 | 100.0% | 97.7% |
| 3oa8A01 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.59 | 46.0 | 3.51e-01 | 88.5% | 44.2% |
| 4xxhA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.59 | 49.0 | 3.66e-01 | 96.2% | 90.6% |
| 1v66A00 | 1.10.720.30 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain | 0.58 | 45.0 | 4.29e-01 | 88.5% | 98.5% |
| 1wj5A01 | 1.10.10.980 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › CST, Suppressor of Cdc13 homolog, complex subunit STN1, N-terminal domain | 0.57 | 43.0 | 3.56e-01 | 86.5% | 43.9% |
| 3favD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.57 | 47.0 | 4.05e-01 | 92.3% | 59.0% |
| 2bskB00 | 1.10.287.810 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mitochondrial import inner membrane translocase subunit tim13 like domains | 0.57 | 42.0 | 4.00e-01 | 94.2% | 66.2% |
| 5vyoD00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.56 | 46.0 | 3.28e-01 | 100.0% | 44.1% |
| 1i5nB00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.56 | 50.0 | 3.78e-01 | 100.0% | 65.3% |
| 2b5dX02 | 1.20.1430.10 | Mainly Alpha › Up-down Bundle › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase, middle domain | 0.56 | 49.0 | 3.84e-01 | 100.0% | 67.5% |
| 4c2dA02 | 1.10.101.10 | Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD | 0.56 | 48.0 | 4.07e-01 | 96.2% | 97.6% |
| 5nl6B01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 46.0 | 3.41e-01 | 88.5% | 62.8% |
| 3iylB02 | 1.10.2050.10 | Mainly Alpha › Orthogonal Bundle › Protein mu-1, chain B, domain 3 › Protein mu-1, chain B, domain 3 | 0.56 | 48.0 | 3.59e-01 | 98.1% | 41.8% |
| 4g2nA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.54 | 47.0 | 3.51e-01 | 96.2% | 96.1% |
| 4kjmA02 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.54 | 43.0 | 4.21e-01 | 94.2% | 81.8% |
| 2ykyB01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.53 | 45.0 | 3.13e-01 | 100.0% | 47.6% |
| 2i7uA00 | 6.10.250.1010 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.52 | 36.0 | 3.51e-01 | 84.6% | 62.9% |
| 2fyfA02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.52 | 43.0 | 3.50e-01 | 96.2% | 81.9% |
| 3hz6A02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.51 | 45.0 | 2.90e-01 | 100.0% | 87.0% |
| 1jb0K00 | 1.20.860.20 | Mainly Alpha › Up-down Bundle › Alpha-t-alpha › Photosystem I PsaK, reaction centre | 0.50 | 38.0 | 4.00e-01 | 94.2% | 100.0% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4662975 | 589.1.2.0 ↗ | alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › TF C-terminus (Pfam 05698) | 0.74 | 66.0 | 4.62e-01 | 100.0% | 32.1% |
| 4957624 | 5045.1.1.0 ↗ | alpha bundles › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A | 0.70 | 55.0 | 3.69e-01 | 86.5% | 66.0% |
| 223746 | 6099.1.1.1 ↗ | alpha arrays › Uncharacterized protein VV2_0175 › Uncharacterized protein VV2_0175 › Uncharacterized protein VV2_0175 › DUF5062 | 0.67 | 57.0 | 4.89e-01 | 98.1% | 87.2% |
| 3781982 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.67 | 53.0 | 3.69e-01 | 86.5% | 98.2% |
| 1877692 | 6026.1.1.1 ↗ | alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › cwf21 | 0.65 | 48.0 | 4.96e-01 | 100.0% | 85.4% |
| 4021942 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.64 | 56.0 | 3.47e-01 | 100.0% | 39.0% |
| 3710238 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.64 | 44.0 | 3.09e-01 | 94.2% | 21.8% |
| 4262319 | 524.1.1.0 ↗ | alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p | 0.63 | 51.0 | 4.02e-01 | 88.5% | 97.1% |
| 3181831 | 7583.1.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like domain in AF1104-like proteins › Rossmann-like domain in AF1104-like proteins › Rossmann-like domain in AF1104-like proteins › ARMT1-like_dom | 0.63 | 52.0 | 3.23e-01 | 100.0% | 23.1% |
| 4109823 | 4967.1.1.6 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › Intron_maturas2 | 0.62 | 44.0 | 3.58e-01 | 78.8% | 38.1% |
| 5049910 | 2003.6.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like | 0.61 | 53.0 | 3.27e-01 | 100.0% | 32.7% |
| 3268369 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.61 | 50.0 | 4.21e-01 | 96.2% | 70.5% |
| 3562784 | 4156.1.1.4 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_C | 0.60 | 50.0 | 3.65e-01 | 92.3% | 66.2% |
| 3971109 | 5086.1.1.85 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_AAEA_pHBA | 0.60 | 48.0 | 4.24e-01 | 86.5% | 85.3% |
| 3596922 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.60 | 49.0 | 3.37e-01 | 86.5% | 61.4% |
| 3580409 | 3826.1.1.26 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › RRP36 | 0.60 | 48.0 | 3.56e-01 | 92.3% | 34.1% |
| 3627844 | 3331.1.1.8 ↗ | a+b two layers › Uncharacterized protein yibL › Uncharacterized protein yibL › Uncharacterized protein yibL › RRP36 | 0.60 | 49.0 | 3.61e-01 | 90.4% | 35.4% |
| 3639319 | 109.4.1.78 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.60 | 41.0 | 2.56e-01 | 84.6% | 13.0% |
| 5059770 | 3896.1.2.1 ↗ | alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-archaeol synthase › CarS-like | 0.59 | 49.0 | 3.50e-01 | 100.0% | 72.2% |
| 1788335 | 2007.2.1.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Flavoproteins › FMN_red | 0.59 | 53.0 | 3.64e-01 | 100.0% | 97.7% |
| 3580708 | 5039.1.1.6 ↗ | alpha bundles › Cytochrome c oxidase subunit III-like › Cytochrome c oxidase subunit III-like › Cytochrome c oxidase subunit III-like › Tmemb_161AB | 0.59 | 47.0 | 2.97e-01 | 86.5% | 80.4% |
| 3703542 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.58 | 43.0 | 3.08e-01 | 82.7% | 28.6% |
| 3213789 | 389.1.1.0 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin | 0.58 | 45.0 | 4.44e-01 | 82.7% | 80.0% |
| 3495550 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.58 | 51.0 | 4.00e-01 | 98.1% | 63.8% |
| 3704855 | 2003.1.9.8 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF, E1_4HB | 0.57 | 45.0 | 3.07e-01 | 100.0% | 20.4% |
| 4943663 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.57 | 49.0 | 3.56e-01 | 100.0% | 95.5% |
| 3498247 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.57 | 44.0 | 2.87e-01 | 82.7% | 23.9% |
| 4939437 | 2003.1.1.9 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › AdoHcyase_NAD | 0.56 | 47.0 | 3.09e-01 | 100.0% | 21.4% |
| 4949746 | 5042.1.1.1 ↗ | extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › CorA | 0.56 | 45.0 | 4.30e-01 | 86.5% | 80.0% |
| 3585901 | 633.6.1.2 ↗ | alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › ACOX | 0.56 | 45.0 | 2.96e-01 | 86.5% | 42.0% |
| 4928145 | 547.1.1.1 ↗ | alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer | 0.55 | 49.0 | 4.22e-01 | 98.1% | 93.8% |
| 3219672 | 601.1.2.79 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › TMEM126_like | 0.55 | 44.0 | 3.12e-01 | 96.2% | 26.7% |
| 4948812 | 2003.1.2.297 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_dim | 0.54 | 42.0 | 2.58e-01 | 92.3% | 70.0% |
| 4872161 | 1131.1.1.1 ↗ | extended segments › Mitochondrial complex I, B14.5b subunit › Mitochondrial complex I, B14.5b subunit › Mitochondrial complex I, B14.5b subunit › NDUF_C2 | 0.54 | 46.0 | 3.56e-01 | 98.1% | 42.5% |
| 3767056 | 2004.1.1.189 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_16 | 0.54 | 48.0 | 3.18e-01 | 100.0% | 29.0% |
| 2651169 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.51 | 46.0 | 3.34e-01 | 98.1% | 72.3% |