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OR088902.1__WJZ27910.1__NCTGTJJY_CDS0031__00031

Bact-Vir

OR088902.1__WJZ27910.1__NCTGTJJY_CDS0031__00031

Identity

Accession:
OR088902 ↗
Kingdom:
phage

Quality

87.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-74
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1rykA00 1.10.1470.10 Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › YjbJ 0.67 49.0 5.02e-01 82.2% 79.7%
6phxA01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.63 39.0 2.60e-01 76.7% 15.1%
1yzbA01 3.90.70.40 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.59 44.0 3.68e-01 97.3% 46.0%
1shyB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 42.0 2.61e-01 75.3% 34.0%
2fmlA02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.59 48.0 3.81e-01 94.5% 96.3%
1q67A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 50.0 4.16e-01 100.0% 91.4%
3gd0A02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.59 50.0 4.45e-01 100.0% 69.6%
1orvA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.58 46.0 2.83e-01 86.3% 25.5%
4phtY02 3.30.420.370 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › GspL cytoplasmic domain, C-terminal subdomain 0.58 41.0 4.44e-01 89.0% 88.7%
7ufsA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.58 45.0 3.14e-01 86.3% 95.0%
2f2hA01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.58 46.0 3.25e-01 89.0% 57.6%
4didB01 1.20.58.450 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Cell division control protein 42 homolog 0.58 44.0 3.76e-01 80.8% 65.8%
3f42A00 3.30.1310.10 Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › Nucleoid-associated protein YbaB-like domain 0.58 39.0 3.61e-01 100.0% 54.8%
1fu1A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.57 47.0 4.04e-01 90.4% 91.5%
2go7A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.57 42.0 4.32e-01 87.7% 86.6%
3dcxA00 2.30.29.50 Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain 0.57 52.0 4.39e-01 100.0% 70.1%
5tkwA02 3.30.420.370 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › GspL cytoplasmic domain, C-terminal subdomain 0.57 43.0 4.46e-01 94.5% 89.4%
4fo0A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.57 46.0 3.61e-01 91.8% 56.6%
1fblA02 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.56 42.0 3.10e-01 100.0% 30.4%
4osnA00 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.56 47.0 4.09e-01 93.2% 94.5%
3fvcA03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.56 47.0 4.12e-01 93.2% 95.5%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.55 37.0 3.35e-01 93.2% 50.0%
3a54A01 2.40.50.340 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 40.0 3.72e-01 75.3% 72.2%
7dpyB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.54 45.0 4.37e-01 93.2% 98.8%
5xbfA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 46.0 4.41e-01 100.0% 90.9%
5f7uA02 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.54 42.0 3.09e-01 89.0% 67.3%
1ei5A02 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.54 43.0 4.19e-01 89.0% 90.2%
7obmA01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.54 44.0 2.91e-01 91.8% 32.7%
3au4A04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 45.0 4.24e-01 100.0% 90.3%
1ybxA00 3.30.1310.10 Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › Nucleoid-associated protein YbaB-like domain 0.53 35.0 3.29e-01 100.0% 53.8%
5cbgA00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.53 40.0 3.65e-01 100.0% 58.8%
3vokA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 40.0 3.18e-01 97.3% 35.8%
2f4lA03 3.10.28.20 Alpha Beta › Roll › Endonuclease I-creI › Acetamidase/Formamidase-like domains 0.53 41.0 4.01e-01 82.2% 81.2%
8eg0B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 46.0 2.95e-01 98.6% 24.9%
4wi1A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.51 37.0 3.20e-01 78.1% 83.7%
2kigA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.51 43.0 3.50e-01 100.0% 72.0%
1n69B00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.51 39.0 3.81e-01 83.6% 78.8%
1hxnA00 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.51 37.0 2.71e-01 100.0% 27.1%
2wdtC02 3.30.1490.420 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ubiquitin carboxyl-terminal hydrolase, domain 2 0.51 43.0 3.92e-01 98.6% 77.2%
1nr0A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 42.0 2.86e-01 97.3% 63.5%
1zymA02 1.10.274.10 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › PtsI, HPr-binding domain 0.50 44.0 3.71e-01 100.0% 73.8%
1ybyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 37.0 3.89e-01 84.9% 89.1%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3739320 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.80 54.0 3.84e-01 100.0% 24.3%
5050879 101.1.2.652 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C 0.71 43.0 3.50e-01 98.6% 33.3%
3493793 5.1.4.258 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1, RCC1_2 0.70 45.0 3.01e-01 100.0% 19.3%
4990252 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.68 50.0 5.00e-01 78.1% 93.2%
4974477 101.1.2.70 alpha arrays › HTH › HTH › winged helix domain › PqqD 0.67 49.0 4.57e-01 78.1% 90.0%
5037569 12.3.1.19 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Gal_mutarotas_2 0.65 48.0 3.49e-01 78.1% 72.3%
3453949 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.63 47.0 3.03e-01 98.6% 17.8%
5014250 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 45.0 4.37e-01 76.7% 83.7%
3710872 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.62 46.0 3.04e-01 100.0% 20.7%
3814126 4263.2.1.0 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain 0.62 41.0 3.95e-01 93.2% 58.8%
3600254 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.62 55.0 4.06e-01 98.6% 73.0%
3937459 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 55.0 4.93e-01 100.0% 95.0%
4983234 298.1.1.24 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.60 43.0 3.22e-01 76.7% 71.4%
3881537 5.1.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed › Hemopexin 0.59 44.0 3.23e-01 100.0% 29.7%
4962256 101.1.2.937 alpha arrays › HTH › HTH › winged helix domain › PF25943 0.59 52.0 4.57e-01 100.0% 74.5%
3833269 5.1.4.550 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.59 44.0 2.87e-01 100.0% 19.0%
3739664 247.1.1.38 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › CPSF73-100_C 0.59 42.0 4.32e-01 100.0% 78.6%
3593313 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.59 53.0 3.90e-01 100.0% 68.9%
5016434 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 53.0 5.28e-01 100.0% 98.7%
3603682 2484.1.1.211 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605, Cas12f1-like_TNB 0.59 48.0 3.49e-01 93.2% 51.6%
3743437 3257.1.1.1 a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N 0.58 43.0 3.17e-01 78.1% 89.5%
3623430 3257.1.1.1 a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N 0.58 40.0 3.14e-01 72.6% 100.0%
185681 3413.1.1.1 alpha bundles › Inositol phosphate phosphatase sopB N-terminal domain › Inositol phosphate phosphatase sopB N-terminal domain › Inositol phosphate phosphatase sopB N-terminal domain › IpgD 0.58 44.0 3.62e-01 80.8% 59.1%
4940356 219.1.1.97 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CEPT76_peptidase 0.58 44.0 3.25e-01 89.0% 31.6%
3992641 331.4.1.9 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › CPSF73-100_C 0.57 43.0 4.38e-01 100.0% 85.7%
4941285 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.57 40.0 4.07e-01 84.9% 77.1%
3590950 79.1.1.0 beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.56 40.0 3.09e-01 74.0% 43.9%
5060936 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.56 39.0 3.71e-01 74.0% 95.6%
4976214 2484.1.1.124 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 0.56 46.0 3.41e-01 91.8% 66.0%
3578119 331.18.1.0 a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc 0.56 47.0 3.58e-01 95.9% 95.1%
3166905 5.1.4.74 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Vps16_N 0.56 45.0 2.97e-01 87.7% 28.1%
4021643 719.2.1.0 beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like 0.56 49.0 4.27e-01 94.5% 72.4%
3402542 4.8.1.2 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.55 36.0 3.67e-01 93.2% 66.7%
3232913 331.18.1.0 a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc 0.55 47.0 3.52e-01 95.9% 94.6%
4145290 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.55 36.0 3.38e-01 100.0% 52.6%
3627094 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 49.0 3.16e-01 97.3% 31.9%
5054848 5.1.10.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.54 41.0 3.69e-01 100.0% 59.0%
3739291 5.1.4.62 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PROPPIN 0.54 47.0 3.09e-01 97.3% 40.3%
5044629 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 38.0 3.41e-01 78.1% 69.6%
4934194 2484.1.1.302 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.54 43.0 3.27e-01 93.2% 60.0%
5002867 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.53 39.0 3.72e-01 93.2% 65.6%
4976401 230.1.1.3 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › PTPS 0.53 42.0 3.45e-01 91.8% 94.8%
5061231 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.53 40.0 4.25e-01 91.8% 100.0%
4995140 2484.1.1.124 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 0.53 43.0 3.52e-01 91.8% 81.4%
3400954 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.52 47.0 3.06e-01 100.0% 35.3%
3614189 5.1.4.19 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Coatomer_WDAD 0.51 46.0 3.14e-01 100.0% 35.9%
4989777 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 45.0 2.97e-01 98.6% 81.9%
3860723 633.23.1.33 alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin, GSG-1 0.51 43.0 3.24e-01 100.0% 70.5%
3341742 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 40.0 3.35e-01 94.5% 58.1%
4184601 12.3.1.6 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Bgal_small_N 0.51 39.0 2.75e-01 89.0% 93.1%
3797677 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 42.0 2.80e-01 100.0% 22.7%
4969758 7089.1.1.0 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.51 38.0 3.65e-01 83.6% 97.8%
4168230 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.51 34.0 3.17e-01 100.0% 53.7%
4424609 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.51 34.0 3.83e-01 100.0% 98.1%
4193845 5.1.4.279 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF26550 0.50 44.0 2.84e-01 97.3% 25.8%
3619889 331.23.1.7 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › CPSF73-100_C 0.50 38.0 3.94e-01 83.6% 98.6%
3624994 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.50 40.0 2.74e-01 93.2% 48.9%