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OR088902.1__WJZ28015.1__NCTGTJJY_CDS0136__00136
Bact-VirOR088902.1__WJZ28015.1__NCTGTJJY_CDS0136__00136
Identity
- Accession:
- OR088902 ↗
- Kingdom:
- phage
Quality
66.6
mean pLDDT
Taxonomy
TaxID: 3053732
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 39-151
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7z0sE01 | 3.30.460.80 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit | 0.66 | 56.0 | 5.57e-01 | 100.0% | 86.6% |
| 2cqaA01 | 2.40.50.360 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain | 0.65 | 34.0 | 4.14e-01 | 95.6% | 78.4% |
| 6u8yK01 | 3.30.460.80 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit | 0.64 | 53.0 | 4.74e-01 | 100.0% | 64.9% |
| 1cjxB02 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.58 | 45.0 | 3.70e-01 | 82.3% | 86.6% |
| 5wy8B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 40.0 | 4.25e-01 | 72.6% | 95.9% |
| 7qprA02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.57 | 47.0 | 4.42e-01 | 88.5% | 83.0% |
| 1rjtA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.56 | 33.0 | 3.94e-01 | 89.4% | 89.0% |
| 3mxtA02 | 3.30.1300.10 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain | 0.56 | 40.0 | 4.25e-01 | 85.0% | 85.0% |
| 6lsaC01 | 2.70.230.10 | Mainly Beta › Distorted Sandwich › Glycoprotein D; Chain: A; › | 0.56 | 42.0 | 3.43e-01 | 78.8% | 88.5% |
| 1vj7B02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.55 | 44.0 | 4.42e-01 | 88.5% | 87.4% |
| 3tw6D02 | 3.10.600.10 | Alpha Beta › Roll › pyruvate carboxylase f1077a mutant fold › pyruvate carboxylase f1077a mutant domain | 0.55 | 34.0 | 4.10e-01 | 86.7% | 93.4% |
| 6s6yD02 | 3.30.70.520 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 41.0 | 3.75e-01 | 100.0% | 59.6% |
| 1sr9A02 | 3.30.160.270 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Alpha-isopropylmalate synthase LeuA, regulatory domain | 0.54 | 41.0 | 3.66e-01 | 79.6% | 86.6% |
| 2qh0A00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.53 | 40.0 | 3.82e-01 | 78.8% | 100.0% |
| 3dc4A00 | 3.40.850.10 | Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain | 0.53 | 40.0 | 3.04e-01 | 81.4% | 51.5% |
| 3zl8A02 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.53 | 32.0 | 2.58e-01 | 89.4% | 28.8% |
| 1kyfA01 | 2.60.40.1230 | Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain | 0.53 | 40.0 | 3.84e-01 | 81.4% | 92.5% |
| 3oa4A01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.52 | 40.0 | 3.80e-01 | 80.5% | 100.0% |
| 1f5aA02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.52 | 42.0 | 3.82e-01 | 87.6% | 86.5% |
| 6ywnA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.52 | 39.0 | 3.99e-01 | 85.8% | 84.3% |
| 1b3qA04 | 2.40.50.180 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › CheA-289, Domain 4 | 0.51 | 26.0 | 3.23e-01 | 73.5% | 82.5% |
| 1y8xB00 | 3.10.290.20 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › Ubiquitin-like 2 activating enzyme e1b. Chain: B, domain 3 | 0.50 | 36.0 | 3.97e-01 | 76.1% | 100.0% |
| 4dixA01 | 2.60.40.2700 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 36.0 | 4.04e-01 | 85.8% | 98.9% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3721850 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.68 | 40.0 | 3.24e-01 | 77.0% | 31.4% |
| 3945307 | 4272.1.1.1 ↗ | a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa | 0.66 | 56.0 | 5.05e-01 | 100.0% | 67.1% |
| 5022567 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.61 | 48.0 | 4.30e-01 | 88.5% | 60.0% |
| 3573761 | 11.1.1.44 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Alpha_adaptinC2 | 0.60 | 44.0 | 4.10e-01 | 77.0% | 95.9% |
| 3248847 | 316.1.1.13 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RelA_SpoT | 0.59 | 48.0 | 4.15e-01 | 87.6% | 65.6% |
| 4990267 | 316.1.1.39 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DUF2204 | 0.56 | 42.0 | 3.59e-01 | 87.6% | 47.9% |
| 3176281 | 896.1.1.3 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP9-21 | 0.56 | 37.0 | 4.28e-01 | 75.2% | 100.0% |
| 4422222 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.55 | 36.0 | 3.27e-01 | 91.2% | 48.7% |
| 3567138 | 2.1.1.133 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF4503 | 0.55 | 39.0 | 3.62e-01 | 100.0% | 57.9% |
| 3276089 | 316.1.1.13 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RelA_SpoT | 0.55 | 45.0 | 3.98e-01 | 88.5% | 73.3% |
| 4030120 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.54 | 44.0 | 2.86e-01 | 92.0% | 19.6% |
| 5072315 | 2.4.1.1 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE | 0.53 | 41.0 | 3.97e-01 | 100.0% | 73.2% |
| 4380575 | 2003.1.2.18 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.53 | 41.0 | 2.94e-01 | 82.3% | 78.7% |
| 3501631 | 896.1.1.2 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP14 | 0.53 | 39.0 | 4.12e-01 | 77.0% | 95.0% |
| 4045594 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 34.0 | 4.15e-01 | 96.5% | 100.0% |
| 3166329 | 2.4.1.1 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE | 0.53 | 40.0 | 3.95e-01 | 100.0% | 75.0% |
| 3707711 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 44.0 | 2.95e-01 | 92.0% | 42.6% |
| 3620503 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.52 | 42.0 | 3.54e-01 | 85.8% | 53.7% |
| 3615658 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 42.0 | 3.52e-01 | 87.6% | 86.0% |
| 1141835 | 220.1.1.17 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_1 | 0.52 | 41.0 | 4.09e-01 | 85.8% | 96.7% |
| 5042766 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.52 | 39.0 | 2.95e-01 | 77.9% | 76.9% |
| 3971880 | 298.1.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain | 0.52 | 36.0 | 3.29e-01 | 87.6% | 54.0% |
| 3679716 | 316.1.1.36 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central | 0.51 | 41.0 | 3.60e-01 | 86.7% | 56.3% |
| 5078979 | 2004.1.1.1212 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DO-GTPase1 | 0.51 | 39.0 | 3.05e-01 | 82.3% | 95.4% |
| 3672217 | 896.1.1.2 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP14 | 0.51 | 37.0 | 3.91e-01 | 77.0% | 98.0% |
| 4971094 | 802.1.1.0 ↗ | a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 | 0.51 | 35.0 | 3.33e-01 | 70.8% | 63.7% |
| 3425162 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.51 | 35.0 | 3.64e-01 | 78.8% | 77.1% |
| 3715483 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.50 | 40.0 | 3.11e-01 | 85.8% | 66.7% |
| 5013239 | 220.1.1.219 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch | 0.50 | 42.0 | 4.27e-01 | 91.2% | 97.3% |
| 3785531 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.50 | 40.0 | 2.75e-01 | 87.6% | 36.1% |
| 4982895 | 2.4.1.0 ↗ | beta barrels › OB-fold › MOP-like › MOP-like | 0.50 | 40.0 | 3.84e-01 | 100.0% | 73.8% |