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OR088902.1__WJZ28134.1__NCTGTJJY_CDS0255__00255

Bact-Vir

OR088902.1__WJZ28134.1__NCTGTJJY_CDS0255__00255

Identity

Accession:
OR088902 ↗
Kingdom:
phage

Quality

89.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Serratia_phage_92A1

TaxID: 3053732

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-119
PDB
Domain cluster: rep: OQ331036.1__WCZ66316.1__X__00152__D2-129
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4l8jA01 2.40.420.20 Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › 0.58 30.0 3.23e-01 76.3% 57.1%
1u5kA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 36.0 4.15e-01 93.2% 87.8%
5i4dA02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 34.0 4.17e-01 94.9% 94.7%
1v1pB02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 32.0 3.96e-01 94.9% 94.6%
2xgtB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 36.0 3.92e-01 100.0% 85.1%
1l0wA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 38.0 4.03e-01 100.0% 86.8%
2cqaA01 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.50 30.0 3.55e-01 92.4% 93.2%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4600925 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 41.0 4.50e-01 92.4% 87.4%
4255386 2.1.1.127 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti_2 0.59 40.0 4.34e-01 92.4% 82.0%
381 2.1.1.57 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.58 36.0 4.20e-01 93.2% 92.3%
4159859 2.1.1.127 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti_2 0.58 40.0 4.32e-01 92.4% 84.0%
5066805 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 37.0 4.15e-01 100.0% 85.4%
5015046 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 36.0 4.15e-01 100.0% 88.2%
4211951 2.1.1.14 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N 0.56 34.0 3.96e-01 89.0% 87.5%
4093810 2.1.1.24 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CcmE 0.56 36.0 3.78e-01 100.0% 70.9%
4987494 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.55 38.0 4.28e-01 100.0% 94.4%
4297076 2.1.1.127 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti_2 0.55 39.0 3.90e-01 78.0% 70.4%
4993338 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.54 38.0 4.14e-01 100.0% 89.5%
5056435 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 37.0 4.17e-01 100.0% 93.3%
4152821 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.53 40.0 4.12e-01 100.0% 80.9%
4193351 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.53 38.0 3.94e-01 100.0% 79.1%
5046650 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.53 42.0 4.02e-01 99.2% 73.3%
4993340 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.53 38.0 4.16e-01 100.0% 91.8%
5075389 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.52 38.0 3.91e-01 99.2% 80.0%
4032927 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 37.0 3.77e-01 79.7% 73.9%
3969368 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 38.0 3.94e-01 100.0% 81.8%
4309540 2.1.1.127 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti_2 0.52 37.0 3.95e-01 80.5% 83.8%
4953069 2.1.1.127 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti_2 0.52 38.0 3.79e-01 98.3% 73.6%
4313430 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.51 37.0 3.52e-01 98.3% 62.6%
4078426 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.51 38.0 3.84e-01 100.0% 77.5%
4188423 2.1.1.127 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti_2 0.51 38.0 3.76e-01 78.8% 74.4%
4609120 2.1.1.127 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti_2 0.51 36.0 4.03e-01 79.7% 96.7%
4033869 2.1.1.127 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti_2 0.51 37.0 3.88e-01 80.5% 84.8%
5060686 2.1.1.127 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti_2 0.51 37.0 3.92e-01 81.4% 85.7%
4065889 2007.1.12.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Type II 3-dehydroquinate dehydratase 0.51 36.0 2.74e-01 79.7% 30.5%
4950974 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.50 35.0 3.73e-01 98.3% 81.0%
4348646 2.1.1.127 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti_2 0.50 37.0 3.90e-01 81.4% 85.7%
None — 0.50 37.0 3.53e-01 98.3% 64.1%
4454256 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.50 38.0 3.60e-01 100.0% 65.5%
4039730 2.1.1.127 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti_2 0.50 36.0 3.84e-01 82.2% 84.8%