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OR122689.1__WLI71644.1__CPTAKMNP4_019__00017

Bact-Vir

OR122689.1__WLI71644.1__CPTAKMNP4_019__00017

Identity

Accession:
OR122689 ↗
Kingdom:
phage

Quality

87.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Gelderlandvirus› Salmonella_phage_vB_SenM-AKM_NP4

TaxID: 3053882

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-97
PDB
Domain cluster: rep: MT161459.1__QIW87046.1__AHP1_2151__00215__D2-83
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF25693.2 best Phage_Y01A 93.5 1.40e-26 97.9% 100.0%
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4e6zA01 3.40.1350.100 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.79 50.0 4.76e-01 100.0% 56.9%
1hbxA01 3.40.1810.10 Alpha Beta › 3-Layer(aba) Sandwich › SRF-like › Transcription factor, MADS-box 0.72 31.0 3.63e-01 95.8% 54.9%
1m1hA01 3.30.70.940 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › NusG, N-terminal domain 0.67 34.0 3.43e-01 90.6% 47.0%
1djsA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 36.0 3.55e-01 100.0% 52.0%
1pu1A00 3.30.300.100 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like 0.61 30.0 3.09e-01 72.9% 49.5%
2yweA05 3.30.70.2570 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation factor 4, C-terminal domain 0.60 36.0 4.09e-01 95.8% 82.4%
2z51A02 3.30.300.130 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › Fe-S cluster assembly (FSCA) 0.56 28.0 3.21e-01 94.8% 63.9%
7ui8A01 2.60.40.3930 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 33.0 3.23e-01 100.0% 55.9%
7wu7501 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.54 37.0 3.44e-01 71.9% 70.6%
3qqnA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 37.0 3.51e-01 100.0% 58.6%
3onqA02 3.30.70.2730 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 27.0 2.90e-01 91.7% 54.3%
2r7rA05 1.10.357.80 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › 0.51 46.0 3.73e-01 99.0% 59.1%
3v6oA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 28.0 2.93e-01 100.0% 56.3%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5023336 304.39.1.0 ↗ a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain 0.71 34.0 3.78e-01 89.6% 57.3%
4113985 304.44.1.0 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 0.70 33.0 3.57e-01 83.3% 51.8%
3318217 263.1.1.1 ↗ a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.67 32.0 3.52e-01 74.0% 55.0%
5042071 304.28.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.67 34.0 3.66e-01 89.6% 56.5%
4959193 304.39.1.0 ↗ a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain 0.66 33.0 3.51e-01 90.6% 51.8%
4540833 304.28.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.65 34.0 3.67e-01 90.6% 57.6%
5054303 304.28.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.63 33.0 3.59e-01 90.6% 60.0%
3246937 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.62 25.0 2.93e-01 72.9% 45.7%
3716197 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.61 33.0 3.26e-01 90.6% 48.0%
3664519 5051.1.1.6 ↗ alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Aa_trans 0.60 46.0 2.96e-01 81.2% 69.5%
4443601 304.28.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.60 32.0 3.46e-01 89.6% 58.8%
3189419 267.1.1.0 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.59 41.0 3.00e-01 72.9% 70.4%
4932448 304.28.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.59 32.0 3.32e-01 89.6% 54.4%
4450606 304.28.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.58 33.0 3.48e-01 89.6% 63.5%
5026422 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.57 32.0 3.05e-01 92.7% 46.1%
None — 0.54 45.0 2.94e-01 91.7% 66.8%
3734132 3542.1.1.3 ↗ alpha arrays › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Peptidase_A22B 0.52 41.0 2.88e-01 86.5% 86.7%
5049975 1075.1.1.0 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain 0.52 38.0 2.82e-01 80.2% 73.7%
4022035 609.1.1.0 ↗ alpha bundles › Domain of poly(ADP-ribose) polymerase › Domain of poly(ADP-ribose) polymerase › Domain of poly(ADP-ribose) polymerase 0.51 37.0 3.61e-01 76.0% 77.3%
3303720 3336.1.1.1 ↗ alpha complex topology › plant-specific ROP nucleotide exchanger (PRONE) domain › plant-specific ROP nucleotide exchanger (PRONE) domain › plant-specific ROP nucleotide exchanger (PRONE) domain › PRONE 0.50 44.0 2.88e-01 93.8% 23.1%