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OR122689.1__WLI71753.1__CPTAKMNP4_131__00126

Bact-Vir

OR122689.1__WLI71753.1__CPTAKMNP4_131__00126

Identity

Accession:
OR122689 ↗
Kingdom:
phage

Quality

87.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Gelderlandvirus› Salmonella_phage_vB_SenM-AKM_NP4

TaxID: 3053882

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-69
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF26894.1 best Phage_T4_Y07C 90.8 9.20e-26 98.4% 98.4%
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1svdM00 3.30.190.10 Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit 0.65 57.0 4.84e-01 100.0% 62.0%
3uaqB01 2.40.128.250 Mainly Beta › Beta Barrel › Lipocalin › 0.60 46.0 3.93e-01 84.4% 93.6%
1burS00 3.30.190.10 Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit 0.59 49.0 4.10e-01 100.0% 64.2%
3sm3A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.58 42.0 3.03e-01 79.7% 32.1%
2r2cB00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 52.0 4.35e-01 100.0% 63.3%
2dvkA00 3.30.1960.10 Alpha Beta › 2-Layer Sandwich › SSo0622-like fold › tRNA wybutosine-synthesizing-like 0.58 51.0 3.78e-01 100.0% 59.0%
7o06C01 3.30.1470.10 Alpha Beta › 2-Layer Sandwich › Photosystem 1 Reaction Centre Subunit Ii; Chain: D; › Photosystem I PsaD, reaction center subunit II 0.57 28.0 2.47e-01 96.9% 26.4%
3rgzA02 3.30.1490.310 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.57 43.0 4.46e-01 90.6% 88.5%
3pjvD01 3.30.110.200 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › 0.56 43.0 4.09e-01 85.9% 73.1%
3pquA01 2.40.128.250 Mainly Beta › Beta Barrel › Lipocalin › 0.56 42.0 3.54e-01 84.4% 96.6%
3qdkB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 48.0 3.22e-01 100.0% 52.2%
4kh9A01 2.60.40.3870 Mainly Beta › Sandwich › Immunoglobulin-like › Uncharacterised protein PF16024, DUF4785 0.56 49.0 3.93e-01 100.0% 49.2%
1l0qA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 42.0 2.78e-01 87.5% 99.3%
1pbyB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 41.0 2.64e-01 87.5% 99.7%
5ncsA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.52 42.0 3.22e-01 87.5% 71.9%
4kfuA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 41.0 2.97e-01 92.2% 53.2%
6m90A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 40.0 2.57e-01 84.4% 20.7%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3657897 5.1.10.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.86 37.0 3.84e-01 100.0% 43.3%
4951995 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.82 37.0 2.83e-01 100.0% 21.9%
3257782 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.64 33.0 2.96e-01 100.0% 36.0%
None — 0.63 53.0 3.66e-01 100.0% 42.6%
5018703 815.1.1.0 ↗ a+b two layers › Chromosomal protein MC1 › Chromosomal protein MC1 › Chromosomal protein MC1 0.61 51.0 4.57e-01 100.0% 66.7%
3738043 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.60 44.0 3.94e-01 100.0% 53.7%
3192849 708.1.2.10 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › HECT_2 0.59 48.0 3.73e-01 98.4% 40.0%
3855040 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.59 43.0 4.11e-01 100.0% 65.0%
3484229 4050.1.1.0 ↗ few secondary structure elements › beta-barrel domain in Capz › beta-barrel domain in Capz › beta-barrel domain in Capz 0.58 34.0 3.78e-01 81.2% 74.0%
3231452 11.1.1.397 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DM13 0.53 45.0 3.74e-01 100.0% 57.6%
3166718 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.52 39.0 3.64e-01 82.8% 82.4%
4810646 109.47.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › Helical C-terminal domain in magnesium chelatase catalytic subunit › Helical C-terminal domain in magnesium chelatase catalytic subunit › CobN-Mg_chel 0.52 26.0 3.04e-01 92.2% 48.9%
3824394 11.1.3.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Cu,Zn superoxide dismutase-like › DM13 0.51 44.0 3.81e-01 100.0% 62.9%
4000079 11.1.1.397 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DM13 0.51 43.0 3.49e-01 100.0% 54.1%
None — 0.51 40.0 2.30e-01 82.8% 28.4%
3402312 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 33.0 3.48e-01 100.0% 73.3%
3574323 3223.1.1.1 ↗ beta sandwiches › Amiloride-sensitive cation channel 2 › Amiloride-sensitive cation channel 2 › Amiloride-sensitive cation channel 2 › ASC 0.50 40.0 2.40e-01 87.5% 55.7%