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OR142618.1__WMI31850.1__GBBBJNDB_00147__00147
Bact-VirOR142618.1__WMI31850.1__GBBBJNDB_00147__00147
Identity
- Accession:
- OR142618 ↗
- Kingdom:
- phage
Quality
70.3
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Arenbergviridae›
Wroclawvirus›
Pseudomonas_phage_Callisto
TaxID: 3061955
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 14-66
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3qcwA02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 39.0 | 2.74e-01 | 84.9% | 41.5% |
| 7b1xA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.52 | 39.0 | 2.60e-01 | 90.6% | 61.0% |
| 1e2tA03 | 2.40.128.150 | Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases | 0.51 | 41.0 | 3.32e-01 | 96.2% | 48.7% |
| 1qmgB01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 37.0 | 2.54e-01 | 81.1% | 72.7% |
| 3tqfA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 36.0 | 2.66e-01 | 79.2% | 94.5% |
D2
high
residues 70-220
Domain cluster:
rep: hypothetical_protein_ml_315__YP_009165281__Mollivirus_sibericum_Viruses.__X__D323-434
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3dclA02 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.61 | 31.0 | 3.86e-01 | 100.0% | 79.1% |
| 2lp6A00 | 2.40.10.190 | Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 | 0.60 | 31.0 | 3.87e-01 | 99.3% | 80.2% |
| 4kqdB00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.55 | 29.0 | 3.22e-01 | 94.0% | 62.1% |
| 4dlqA01 | 4.10.1240.10 | Few Secondary Structures › Irregular › Hormone receptor fold › GPCR, family 2, extracellular hormone receptor domain | 0.55 | 23.0 | 3.32e-01 | 84.1% | 90.0% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3966494 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.68 | 38.0 | 4.40e-01 | 92.1% | 74.5% |
| 5068036 | 4.1.1.3 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW | 0.59 | 21.0 | 3.48e-01 | 79.5% | 100.0% |
| 5015084 | 239.1.1.7 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Lhr_WH | 0.59 | 25.0 | 3.75e-01 | 80.8% | 96.7% |
| 4222919 | 1.1.12.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth | 0.53 | 30.0 | 3.33e-01 | 94.0% | 65.6% |
| 4681723 | 239.1.1.3 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p | 0.52 | 33.0 | 3.97e-01 | 100.0% | 100.0% |
| 3971141 | 1.1.7.80 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RND-MFP_C | 0.52 | 28.0 | 3.49e-01 | 92.7% | 86.7% |
| 4503580 | 1.1.7.83 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › YknX_C | 0.51 | 27.0 | 3.61e-01 | 92.7% | 97.5% |
| 4188663 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.50 | 30.0 | 3.67e-01 | 74.2% | 93.7% |
| 3388111 | 1.1.7.83 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › YknX_C | 0.50 | 28.0 | 3.42e-01 | 92.7% | 85.3% |
D3
medium
residues 593-678
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2nr7A00 | 1.20.141.10 | Mainly Alpha › Up-down Bundle › Chitosanase, subunit A; domain 1 › Chitosanase, subunit A, domain 1 | 0.58 | 41.0 | 3.12e-01 | 73.3% | 85.1% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4527091 | 192.2.1.3 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Rad50_zn_hook | 0.70 | 59.0 | 4.21e-01 | 100.0% | 31.4% |
| 5026250 | 3755.3.1.305 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Rad50_zn_hook | 0.70 | 58.0 | 4.51e-01 | 98.8% | 41.6% |
| 3804939 | 192.2.1.3 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Rad50_zn_hook | 0.70 | 52.0 | 4.35e-01 | 86.0% | 47.9% |
| 4046724 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.66 | 47.0 | 3.89e-01 | 95.3% | 42.7% |
| 3744248 | 60.1.2.2 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku,Ku_C | 0.63 | 34.0 | 2.42e-01 | 75.6% | 16.9% |
| 5073392 | 606.1.1.0 ↗ | alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain | 0.54 | 33.0 | 3.25e-01 | 70.9% | 54.7% |
| 3203788 | 109.3.1.166 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3 | 0.50 | 40.0 | 2.89e-01 | 90.7% | 48.6% |
D4
medium
residues 722-775
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4xchA00 | 3.30.1360.80 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › S-ribosylhomocysteinase (LuxS) | 0.60 | 43.0 | 3.13e-01 | 75.9% | 61.7% |
| 2wqgA00 | 1.10.720.30 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain | 0.58 | 40.0 | 4.12e-01 | 77.8% | 76.5% |
| 2liuA01 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.57 | 44.0 | 3.81e-01 | 85.2% | 76.5% |
| 2fp1B00 | 1.20.59.10 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase | 0.53 | 39.0 | 2.80e-01 | 79.6% | 29.9% |
| 5f4bA00 | 3.40.50.360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain | 0.53 | 39.0 | 2.75e-01 | 79.6% | 24.9% |
| 2mf4A01 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.51 | 38.0 | 3.39e-01 | 83.3% | 75.6% |
| 6t4hA03 | 1.10.3060.10 | Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA | 0.50 | 36.0 | 2.54e-01 | 75.9% | 75.0% |
| 2ganA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.50 | 40.0 | 2.92e-01 | 87.0% | 79.9% |
| 2rdcA00 | 1.10.287.800 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242 | 0.50 | 41.0 | 3.10e-01 | 90.7% | 53.4% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3645589 | 3748.1.1.3 ↗ | extended segments › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › eIF3h_C | 0.73 | 38.0 | 2.88e-01 | 70.4% | 22.0% |
| 4934139 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.59 | 51.0 | 4.97e-01 | 100.0% | 100.0% |
| 3203788 | 109.3.1.166 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3 | 0.57 | 47.0 | 3.04e-01 | 100.0% | 29.7% |
| 2581397 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.55 | 45.0 | 3.77e-01 | 94.4% | 96.9% |
| 3953585 | 2004.1.1.417 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, AAA_21 | 0.54 | 38.0 | 2.45e-01 | 74.1% | 43.0% |
D5
medium
residues 776-894