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OR142618.1__WMI32014.1__GBBBJNDB_00323__00311

Bact-Vir

OR142618.1__WMI32014.1__GBBBJNDB_00323__00311

Identity

Accession:
OR142618 ↗
Kingdom:
phage

Quality

77.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-83
PDB
CATH (58)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2pt7G02 3.30.1370.180 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.76 60.0 6.42e-01 98.7% 100.0%
3evzA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.73 57.0 4.49e-01 94.9% 40.4%
8c9vA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.71 52.0 4.00e-01 89.7% 33.7%
5mmjh01 3.30.1370.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.70 50.0 5.08e-01 89.7% 77.3%
3hz7A00 3.30.110.40 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › TusA-like domain 0.70 51.0 5.32e-01 89.7% 83.6%
2cpmA00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.70 58.0 5.46e-01 100.0% 75.5%
2gukA00 3.30.2190.10 Alpha Beta › 2-Layer Sandwich › PG1857-like › PG1857-like 0.68 52.0 4.58e-01 91.0% 56.8%
2vs7A02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.64 48.0 4.85e-01 91.0% 79.5%
5x7fA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.64 49.0 3.68e-01 93.6% 32.8%
3p04A00 3.30.110.150 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › SepF-like protein 0.62 44.0 4.48e-01 89.7% 76.6%
3zxoA00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.61 48.0 4.09e-01 84.6% 66.4%
4dzrA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.61 47.0 3.75e-01 93.6% 40.5%
1jvaB02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.60 45.0 4.03e-01 85.9% 56.4%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 45.0 4.15e-01 87.2% 63.0%
3mtiB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.60 52.0 4.01e-01 98.7% 42.8%
2py6A03 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.59 44.0 3.49e-01 89.7% 35.6%
1dq3A04 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.59 50.0 4.45e-01 98.7% 64.9%
3pqvC01 3.65.10.20 Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › RNA 3'-terminal phosphate cyclase domain 0.59 50.0 3.56e-01 96.2% 96.1%
4atnA03 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.59 47.0 3.65e-01 89.7% 39.6%
3r0aA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 45.0 3.99e-01 92.3% 55.8%
2nrqA00 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.58 39.0 3.28e-01 73.1% 39.4%
6blkC00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.58 47.0 3.73e-01 87.2% 67.7%
4kp4A02 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.58 44.0 3.58e-01 80.8% 91.2%
4gt8A00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.58 47.0 3.98e-01 89.7% 96.2%
1yyvB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 44.0 3.97e-01 92.3% 58.0%
5idmA00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.58 46.0 3.55e-01 87.2% 66.1%
6lgqC01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.57 46.0 3.88e-01 87.2% 68.7%
7qssA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.57 50.0 3.83e-01 100.0% 94.7%
4pl9A00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.57 46.0 3.74e-01 88.5% 63.3%
3hyiA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.57 50.0 3.77e-01 98.7% 40.8%
5wt3A03 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 43.0 3.36e-01 88.5% 35.9%
2p4wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 42.0 3.94e-01 87.2% 62.1%
1p4xA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 43.0 3.76e-01 92.3% 52.8%
2n8lA00 3.30.310.210 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.57 49.0 3.66e-01 94.9% 72.3%
1gkxA01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.56 46.0 3.70e-01 88.5% 65.6%
1b24A01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.56 46.0 4.37e-01 92.3% 81.1%
5w2fA01 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.56 39.0 3.84e-01 75.6% 66.3%
7n0eB02 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.56 45.0 3.92e-01 88.5% 63.9%
1q1hA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 41.0 4.05e-01 92.3% 74.1%
4r3aA02 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.55 43.0 3.62e-01 87.2% 64.1%
2j3rB00 3.30.1380.20 Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 0.55 48.0 3.85e-01 98.7% 89.8%
1ef0B02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.55 48.0 3.68e-01 100.0% 43.1%
3hozA02 3.30.1360.140 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.54 39.0 3.58e-01 75.6% 79.6%
1sfxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 40.0 3.70e-01 87.2% 60.6%
3mjgX03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 38.0 3.57e-01 79.5% 59.4%
3elkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 45.0 4.12e-01 100.0% 71.4%
5h20A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 46.0 4.21e-01 100.0% 73.8%
2dqlA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 44.0 3.92e-01 94.9% 67.0%
1vdhA01 3.30.70.1030 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Apc35880; domain 1 0.52 41.0 3.51e-01 84.6% 65.3%
3l9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 42.0 4.09e-01 92.3% 80.9%
3u83A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 37.0 3.41e-01 76.9% 58.4%
3l7wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 41.0 3.75e-01 94.9% 65.7%
1id0A00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.51 40.0 3.32e-01 85.9% 69.9%
1bm9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 41.0 3.65e-01 91.0% 63.3%
5flmA02 3.30.1360.140 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.51 44.0 3.72e-01 100.0% 75.7%
3jz3B01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.51 43.0 3.53e-01 96.2% 94.6%
5l10B00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.50 42.0 3.32e-01 93.6% 95.9%
1yz7A02 3.30.70.1130 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › EIF_2_alpha 0.50 38.0 3.64e-01 80.8% 84.4%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3473363 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.77 60.0 6.54e-01 93.6% 100.0%
3695303 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.73 64.0 5.49e-01 100.0% 68.8%
1900987 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.73 57.0 4.28e-01 94.9% 34.0%
3639962 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.72 63.0 6.20e-01 100.0% 90.6%
5016171 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 56.0 4.42e-01 91.0% 43.8%
3599895 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.68 52.0 3.68e-01 83.3% 26.2%
3485233 2003.1.5.73 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 0.67 54.0 3.74e-01 89.7% 26.1%
5015712 2003.1.5.54 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_10 0.66 59.0 4.06e-01 98.7% 34.5%
5015050 2003.1.5.82 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 0.66 59.0 4.12e-01 98.7% 34.6%
3602264 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.66 50.0 4.87e-01 91.0% 74.1%
4997605 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.65 50.0 4.63e-01 92.3% 64.0%
5069904 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.65 52.0 4.34e-01 100.0% 49.3%
5029853 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.65 49.0 4.30e-01 92.3% 53.3%
4943245 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.64 49.0 4.16e-01 92.3% 49.2%
4026240 328.6.1.2 a+b two layers › IF3-like › EPT/RTPC-like › EPT/RTPC-like › RTC 0.64 56.0 3.86e-01 97.4% 94.3%
None 0.64 56.0 3.92e-01 98.7% 35.7%
3285125 2003.1.5.66 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.63 50.0 3.74e-01 88.5% 37.1%
3173837 327.11.2.35 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › PF29984 0.63 47.0 3.88e-01 80.8% 57.2%
3223387 101.1.2.65 alpha arrays › HTH › HTH › winged helix domain › Rad21_Rec8 0.63 52.0 5.31e-01 97.4% 94.7%
None 0.62 43.0 4.08e-01 70.5% 65.6%
3742570 101.1.2.65 alpha arrays › HTH › HTH › winged helix domain › Rad21_Rec8 0.61 51.0 4.73e-01 98.7% 72.0%
3642333 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.61 53.0 4.17e-01 100.0% 89.7%
4153241 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.61 52.0 4.80e-01 98.7% 82.9%
4650006 101.1.2.39 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA 0.60 47.0 4.89e-01 94.9% 94.3%
2588 101.1.2.143 alpha arrays › HTH › HTH › winged helix domain › HTH_34 0.60 45.0 4.15e-01 87.2% 63.0%
4348647 101.1.2.39 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA 0.60 47.0 4.92e-01 94.9% 95.7%
4031357 101.1.2.39 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA 0.60 46.0 4.81e-01 91.0% 92.9%
5931 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.59 42.0 3.86e-01 75.6% 61.5%
3555254 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.58 40.0 4.06e-01 71.8% 72.5%
3973210 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.58 39.0 3.61e-01 70.5% 65.7%
4999898 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.58 47.0 4.57e-01 92.3% 78.9%
4322962 101.1.2.39 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA 0.58 45.0 4.69e-01 94.9% 94.3%
4886685 101.1.2.39 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA 0.57 44.0 3.25e-01 94.9% 30.0%
415845 101.1.2.214 alpha arrays › HTH › HTH › winged helix domain › DnaD_N 0.57 44.0 3.89e-01 92.3% 54.5%
3977348 225.1.1.3 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.57 46.0 3.85e-01 89.7% 95.7%
4187927 101.1.2.39 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA 0.56 44.0 4.56e-01 98.7% 94.3%
4622104 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 45.0 4.33e-01 97.4% 78.9%
4983426 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 44.0 4.43e-01 97.4% 88.7%
2600086 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.56 39.0 3.86e-01 87.2% 69.0%
3213699 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.53 31.0 2.98e-01 70.5% 46.3%
4952592 882.1.1.4 a+b two layers › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal protein L5 › RNA_binding 0.52 34.0 2.85e-01 89.7% 37.1%