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OR142618.1__WMI32056.1__GBBBJNDB_00365__00353

Bact-Vir

OR142618.1__WMI32056.1__GBBBJNDB_00365__00353

Identity

Accession:
OR142618 ↗
Kingdom:
phage

Quality

79.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 22-76
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vwxS02 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.82 74.0 6.64e-01 100.0% 72.4%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.80 71.0 6.37e-01 100.0% 72.4%
3qvnA02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.77 55.0 4.30e-01 100.0% 35.9%
4llgM00 3.10.20.510 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor 0.76 58.0 6.05e-01 100.0% 92.0%
4ezeB00 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.75 51.0 3.19e-01 70.9% 63.3%
2qsdA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.73 60.0 5.66e-01 98.2% 77.6%
2cuwA00 3.30.1280.10 Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS 0.72 63.0 5.56e-01 100.0% 96.4%
4njcA00 3.10.20.730 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNAP, epsilon subunit-like 0.72 60.0 5.92e-01 100.0% 86.7%
1vwxS01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.72 63.0 5.85e-01 100.0% 81.7%
2zw2A00 3.30.1280.10 Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS 0.71 63.0 5.45e-01 100.0% 96.5%
3nycA02 3.30.9.10 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 0.69 60.0 4.44e-01 100.0% 54.0%
2hw4A01 3.50.20.20 Alpha Beta › 3-Layer(bba) Sandwich › Pyruvoyl-Dependent Histidine Decarboxylase; Chain B › Janus/Ocnus 0.69 54.0 4.51e-01 100.0% 46.4%
2j3wC00 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.66 43.0 3.24e-01 80.0% 27.4%
3rjaA02 3.40.462.20 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › 0.66 57.0 3.79e-01 100.0% 35.8%
1mt1B00 3.50.20.10 Alpha Beta › 3-Layer(bba) Sandwich › Pyruvoyl-Dependent Histidine Decarboxylase; Chain B › Pyruvoyl-Dependent Histidine Decarboxylase, subunit B 0.65 56.0 4.51e-01 100.0% 59.8%
3mfiA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.64 54.0 4.32e-01 100.0% 52.9%
2v3sA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.64 53.0 4.52e-01 96.4% 97.9%
2rrnA01 3.30.70.2040 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 54.0 4.83e-01 100.0% 94.0%
6usmB01 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.63 51.0 3.89e-01 96.4% 86.4%
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.61 49.0 4.04e-01 100.0% 46.8%
2h41A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 42.0 3.64e-01 100.0% 46.3%
2wnwA01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.58 48.0 4.05e-01 100.0% 100.0%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.58 46.0 3.96e-01 92.7% 52.1%
2je6A01 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.58 44.0 2.90e-01 85.5% 39.8%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.58 48.0 3.96e-01 100.0% 52.3%
4lvnP00 3.30.70.2380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 44.0 4.01e-01 89.1% 93.8%
6kryA01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.56 48.0 3.68e-01 100.0% 70.3%
2dulA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 44.0 2.86e-01 94.5% 62.0%
3hvnA01 3.90.840.10 Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain 0.56 45.0 3.35e-01 100.0% 37.2%
3n0vA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.56 44.0 3.93e-01 92.7% 95.2%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.55 45.0 3.88e-01 96.4% 55.4%
3kwlA01 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.55 46.0 3.95e-01 100.0% 74.2%
5utkA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 38.0 3.44e-01 100.0% 50.6%
3qtdA01 3.30.2290.10 Alpha Beta › 2-Layer Sandwich › PmbA/TldD fold › PmbA/TldD superfamily 0.54 38.0 2.66e-01 80.0% 20.6%
2wadA02 3.90.1310.10 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) 0.54 36.0 2.85e-01 89.1% 27.7%
2kl8A00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.54 45.0 3.92e-01 92.7% 88.2%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.53 48.0 3.40e-01 98.2% 91.0%
3waiA02 2.60.40.3390 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 42.0 3.68e-01 100.0% 57.0%
2avxA00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.51 37.0 2.74e-01 80.0% 79.5%
6jptA00 3.30.230.90 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.51 37.0 3.00e-01 81.8% 65.3%
5hdwA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.51 40.0 3.29e-01 100.0% 45.8%
3rb5A02 2.60.40.2030 Mainly Beta › Sandwich › Immunoglobulin-like › CalX-beta domain 0.51 39.0 3.21e-01 100.0% 41.6%
5u3fB01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.51 42.0 3.20e-01 92.7% 94.3%
3vskA02 1.10.10.1230 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Penicillin-binding protein, N-terminal non-catalytic domain, head sub-domain 0.51 37.0 2.90e-01 83.6% 100.0%
3eipA00 3.10.50.20 Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein 0.51 42.0 3.78e-01 100.0% 94.0%
1xvsA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.51 40.0 3.33e-01 100.0% 50.4%
5l10B00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.50 34.0 2.53e-01 72.7% 55.3%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4084879 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.86 78.0 6.67e-01 100.0% 69.4%
4013514 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.85 78.0 6.19e-01 100.0% 52.4%
4967222 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.83 76.0 7.37e-01 100.0% 91.7%
4937773 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.83 76.0 7.46e-01 100.0% 94.8%
4990637 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.82 74.0 6.40e-01 100.0% 67.5%
5067865 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.81 73.0 6.75e-01 100.0% 78.6%
5012895 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.81 71.0 7.11e-01 100.0% 96.4%
4951473 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.81 73.0 7.02e-01 100.0% 87.3%
4939739 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.81 73.0 7.13e-01 100.0% 93.2%
3216210 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.80 65.0 6.82e-01 98.2% 98.0%
4160542 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.80 72.0 7.14e-01 100.0% 94.8%
4969863 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.80 72.0 6.46e-01 100.0% 73.3%
5074648 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.78 71.0 6.36e-01 100.0% 73.3%
5013194 3115.4.1.0 a+b two layers › GP2-like › Uncharacterized conserved protein Il1583 › Uncharacterized conserved protein Il1583 0.78 68.0 6.82e-01 96.4% 98.2%
3508212 3115.1.1.6 a+b two layers › GP2-like › RplX-like › RplX-like › DUF4494 0.77 70.0 6.42e-01 100.0% 81.4%
3517068 3115.1.1.6 a+b two layers › GP2-like › RplX-like › RplX-like › DUF4494 0.77 68.0 6.50e-01 100.0% 87.7%
4929776 3115.5.1.0 a+b two layers › GP2-like › phenylacetate-CoA oxygenase subunit PaaB › phenylacetate-CoA oxygenase subunit PaaB 0.74 63.0 5.89e-01 100.0% 75.7%
3987406 3115.6.1.1 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › RpoY 0.74 65.0 5.87e-01 100.0% 80.0%
3700104 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.74 64.0 5.09e-01 100.0% 85.2%
3551719 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.73 65.0 5.90e-01 100.0% 77.3%
223776 3115.4.1.1 a+b two layers › GP2-like › Uncharacterized conserved protein Il1583 › Uncharacterized conserved protein Il1583 › DUF1543 0.73 61.0 5.69e-01 100.0% 74.6%
3287357 3115.3.1.0 a+b two layers › GP2-like › P56 › P56 0.70 59.0 5.86e-01 100.0% 96.6%
5041452 303.1.1.1 a+b four layers › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › PvlArgDC 0.69 61.0 4.42e-01 100.0% 44.4%
3409626 4114.1.1.2 a+b two layers › PHP14-like › PHP14-like › PHP14-like › Ocnus 0.68 54.0 4.54e-01 100.0% 48.2%
3926687 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.68 58.0 4.60e-01 100.0% 50.0%
4943313 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.68 57.0 5.04e-01 100.0% 95.3%
3409700 4114.1.1.2 a+b two layers › PHP14-like › PHP14-like › PHP14-like › Ocnus 0.68 55.0 4.51e-01 100.0% 47.0%
4973750 304.18.1.0 a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS 0.67 49.0 4.60e-01 83.6% 100.0%
3508990 3115.3.1.2 a+b two layers › GP2-like › P56 › P56 › DUF2922 0.65 56.0 5.43e-01 100.0% 95.3%
4988423 4210.1.1.0 a+b two layers › WGR domain › WGR domain › WGR domain 0.65 50.0 4.45e-01 85.5% 88.7%
5053865 821.1.1.0 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.64 53.0 4.67e-01 100.0% 63.3%
5041711 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.63 52.0 4.94e-01 98.2% 100.0%
3181136 4099.1.1.4 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-O 0.63 45.0 3.47e-01 78.2% 72.3%
3941935 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.62 50.0 4.06e-01 100.0% 45.2%
3471734 245.1.1.0 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.61 42.0 3.73e-01 72.7% 50.0%
4929350 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.61 50.0 4.59e-01 100.0% 98.8%
3628891 2492.1.1.0 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.60 50.0 4.01e-01 100.0% 45.6%
4947413 304.163.1.0 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.60 52.0 4.92e-01 98.2% 98.5%
3511415 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.59 49.0 3.71e-01 100.0% 50.0%
3593981 302.1.1.0 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain 0.59 49.0 4.11e-01 100.0% 52.4%
3734833 304.14.1.0 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) 0.59 49.0 4.28e-01 100.0% 98.9%
2723970 302.4.1.0 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.59 48.0 3.90e-01 100.0% 49.6%
3493644 10.32.1.203 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.59 50.0 3.64e-01 100.0% 66.7%
3981254 12.1.1.29 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_30C 0.59 49.0 4.03e-01 100.0% 100.0%
4945049 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.58 47.0 4.10e-01 98.2% 78.9%
4330212 302.4.1.0 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.58 49.0 3.95e-01 100.0% 47.8%
4029586 10.32.1.203 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.57 48.0 3.63e-01 100.0% 70.7%
3486820 284.1.1.0 a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.57 48.0 3.93e-01 96.4% 73.3%
2557261 807.1.1.1 a+b two layers › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › CpcD 0.57 48.0 4.18e-01 100.0% 70.7%
3219557 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.57 46.0 4.50e-01 92.7% 91.7%
5013176 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.57 44.0 4.12e-01 94.5% 100.0%
3242055 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.57 42.0 2.37e-01 78.2% 30.0%
3740347 10.32.1.203 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.56 48.0 3.50e-01 100.0% 75.2%
5049412 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.56 46.0 3.70e-01 100.0% 45.6%
3694098 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.56 45.0 3.65e-01 96.4% 87.5%
3926811 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.55 47.0 3.96e-01 100.0% 62.0%
3789523 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 48.0 3.56e-01 100.0% 46.2%
5024227 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 46.0 4.45e-01 98.2% 90.5%
3420779 10.32.1.203 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.54 37.0 2.76e-01 74.5% 92.5%
3596087 302.1.1.0 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain 0.53 44.0 3.67e-01 100.0% 59.1%
4927303 525.1.1.1 a+b two layers › Urease, gamma-subunit › Urease, gamma-subunit › Urease, gamma-subunit › Urease_gamma 0.53 42.0 3.47e-01 98.2% 88.3%
3230319 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.51 40.0 3.71e-01 96.4% 67.5%
4871776 4019.1.1.0 alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins 0.50 33.0 3.53e-01 76.4% 86.7%