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OR147960.1__WKV32873.1__R21Y_112__00112

Bact-Vir

OR147960.1__WKV32873.1__R21Y_112__00112

Identity

Accession:
OR147960 ↗
Kingdom:
phage

Quality

91.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_vB_VhaS_R21Y

TaxID: 3061956

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 50-133
PDB
Domain cluster: rep: NC_016567.1__YP_004957547.1__VPEG_00054__00054__D22-97
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.75 51.0 5.65e-01 96.4% 89.4%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.72 49.0 5.49e-01 96.4% 93.7%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.71 48.0 5.46e-01 96.4% 95.2%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 47.0 5.17e-01 98.8% 96.8%
2ia7A00 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 41.0 3.73e-01 79.8% 50.5%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 43.0 4.68e-01 96.4% 88.4%
2ichA01 2.40.370.10 Mainly Beta › Beta Barrel › AttH-like fold › AttH-like domain 0.60 45.0 3.55e-01 79.8% 96.6%
3f8lB00 3.40.1410.10 Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like 0.60 46.0 3.71e-01 82.1% 50.3%
3k6yA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 47.0 4.32e-01 84.5% 89.7%
2nwiB00 3.40.1410.10 Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like 0.58 43.0 3.55e-01 77.4% 53.6%
4p2iA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.58 43.0 3.95e-01 82.1% 82.9%
4ge6A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.57 47.0 3.09e-01 85.7% 31.4%
1ni9A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.57 43.0 3.51e-01 79.8% 87.4%
1gyvA00 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.56 48.0 4.28e-01 95.2% 95.8%
4c0dB00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.55 37.0 2.88e-01 94.0% 30.4%
2i1yA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.55 45.0 3.01e-01 85.7% 29.6%
2w38A01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.55 43.0 2.97e-01 88.1% 34.6%
2bzlA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.54 44.0 2.97e-01 85.7% 33.5%
3pgbA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 42.0 3.76e-01 82.1% 71.3%
3ebwA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 46.0 3.99e-01 100.0% 73.9%
2nlkA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.54 42.0 3.01e-01 85.7% 35.4%
4zciA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 38.0 3.63e-01 100.0% 62.4%
1gofA02 2.130.10.80 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Galactose oxidase/kelch, beta-propeller 0.53 47.0 3.00e-01 96.4% 84.5%
4c4aA04 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.53 38.0 3.19e-01 77.4% 96.9%
3cnvA01 3.40.1410.10 Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like 0.52 39.0 3.21e-01 81.0% 57.4%
4edjA02 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.51 43.0 4.16e-01 94.0% 92.9%
3rleA01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.51 44.0 4.10e-01 95.2% 89.4%
6gp1A00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.51 32.0 3.51e-01 81.0% 81.5%
2r39A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 40.0 3.75e-01 88.1% 92.7%
2k4vA00 3.30.160.370 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 0.50 42.0 3.75e-01 96.4% 70.4%
4q97A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 36.0 3.39e-01 77.4% 88.9%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5028251 5090.1.1.0 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains 0.71 58.0 5.32e-01 89.3% 89.1%
4241291 4010.1.1.3 ↗ a+b complex topology › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_3 0.64 54.0 3.86e-01 92.9% 49.4%
4071970 4010.1.1.3 ↗ a+b complex topology › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_3 0.64 52.0 3.78e-01 90.5% 53.9%
3203392 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.63 50.0 3.55e-01 84.5% 42.9%
3268888 2.1.1.44 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 0.60 47.0 4.59e-01 83.3% 94.4%
3703449 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.60 49.0 5.15e-01 98.8% 97.3%
4402835 4010.1.1.2 ↗ a+b complex topology › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 0.60 50.0 3.60e-01 94.0% 46.4%
4935307 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.60 35.0 3.60e-01 70.2% 60.0%
3660107 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.60 45.0 3.88e-01 82.1% 75.0%
3175156 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.59 45.0 4.84e-01 97.6% 98.6%
3589746 814.1.1.3 ↗ a+b two layers › Chorismate lyase › Chorismate lyase › Chorismate lyase › UTRA 0.59 45.0 3.68e-01 82.1% 51.9%
3590061 814.1.1.3 ↗ a+b two layers › Chorismate lyase › Chorismate lyase › Chorismate lyase › UTRA 0.59 45.0 3.66e-01 81.0% 52.5%
3460645 4177.1.1.0 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.59 46.0 3.02e-01 85.7% 27.4%
3251342 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.58 45.0 4.06e-01 84.5% 80.0%
3412668 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.58 44.0 3.94e-01 82.1% 76.7%
5007131 1.1.7.28 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.58 46.0 4.41e-01 98.8% 75.8%
4238063 5.1.4.15 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RPE65 0.56 46.0 2.99e-01 88.1% 28.8%
146240 4010.1.1.1 ↗ a+b complex topology › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_1 0.56 47.0 3.72e-01 95.2% 72.6%
4876253 4010.1.1.1 ↗ a+b complex topology › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_1 0.56 41.0 3.80e-01 79.8% 63.5%
3622698 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.56 44.0 2.91e-01 85.7% 27.9%
3607708 4178.1.1.0 ↗ beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain 0.55 41.0 3.20e-01 78.6% 55.6%
3696153 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.55 45.0 3.09e-01 91.7% 59.7%
3249127 222.1.1.0 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.55 40.0 3.03e-01 78.6% 57.3%
3588488 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.54 40.0 3.85e-01 77.4% 74.7%
3824181 375.1.1.21 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.54 36.0 4.13e-01 77.4% 96.7%
3229636 331.3.1.6 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PRELI 0.54 42.0 3.28e-01 84.5% 74.6%
3250190 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.54 44.0 2.79e-01 90.5% 40.9%
4964533 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.53 48.0 4.06e-01 100.0% 67.9%
3493866 216.1.1.26 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › FmiP_Thoc5 0.53 37.0 3.46e-01 79.8% 58.1%
3861891 330.1.1.26 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_RDM1 0.53 39.0 3.39e-01 78.6% 71.9%
3410461 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 41.0 2.68e-01 82.1% 33.0%
143825 243.5.1.1 ↗ a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region › Cu_amine_oxidN2 0.53 42.0 3.68e-01 85.7% 66.9%
3193145 2003.1.2.29 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › NAD_binding_8 0.52 43.0 2.77e-01 91.7% 48.8%
3936609 5.1.3.176 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › APEH_N 0.52 42.0 2.66e-01 88.1% 17.2%
3550298 331.3.1.6 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PRELI 0.52 35.0 2.78e-01 77.4% 32.2%
4939356 1.1.7.28 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.52 45.0 4.16e-01 100.0% 75.5%
5051723 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 38.0 3.57e-01 79.8% 76.2%
3759604 7.1.1.4 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › GRASP55_65 0.51 43.0 3.75e-01 95.2% 69.6%
4211964 7504.1.1.5 ↗ a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › DUF5427 0.51 40.0 3.07e-01 88.1% 86.4%
2490256 271.1.1.1 ↗ beta barrels › GFP-like › GFP-like › GFP-like › GFP 0.51 32.0 3.54e-01 81.0% 81.8%
3597835 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.51 42.0 3.47e-01 96.4% 84.7%
4968533 1.1.1.18 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2 0.50 43.0 3.86e-01 94.0% 76.5%