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OR159649.1__WKW84827.1__SEA_JAMZY_36__00036

Bact-Vir

OR159649.1__WKW84827.1__SEA_JAMZY_36__00036

Identity

Accession:
OR159649 ↗
Kingdom:
phage

Quality

86.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Emalynvirus› Gordonia_phage_Jamzy

TaxID: 3062835

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 48-122
PDB
Domain cluster: rep: NC_070896.1__YP_010663381.1__PP997_gp33__00033__D89-160
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1dcnA03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.76 53.0 5.43e-01 73.3% 75.0%
1tj7A03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.76 52.0 5.36e-01 74.7% 74.6%
2yhsA01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.71 48.0 4.42e-01 72.0% 54.6%
3nbiA01 1.10.8.1020 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecQ-mediated genome instability protein 1, N-terminal domain 0.70 49.0 5.37e-01 72.0% 96.6%
6rxaA01 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.69 49.0 4.70e-01 74.7% 72.4%
1wj7A01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.67 48.0 5.19e-01 96.0% 95.0%
1w5sA01 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.66 52.0 4.96e-01 85.3% 92.0%
1fnnA01 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.66 55.0 5.00e-01 92.0% 90.1%
5ubvA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.64 48.0 4.93e-01 80.0% 85.9%
3clhA02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.64 53.0 4.36e-01 96.0% 99.3%
3h4cA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.63 46.0 4.21e-01 76.0% 60.4%
5x68A00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.63 54.0 3.47e-01 94.7% 83.3%
3whkA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.62 46.0 4.74e-01 80.0% 83.3%
4rflA02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.62 53.0 4.02e-01 100.0% 100.0%
4a3vB01 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.62 46.0 4.72e-01 80.0% 84.7%
1qusA01 1.10.8.350 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Bacterial muramidase 0.62 48.0 4.25e-01 85.3% 85.8%
3qbeA02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.62 52.0 4.05e-01 98.7% 99.5%
2gruA02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.62 52.0 3.96e-01 98.7% 99.5%
3n3uA00 1.10.3290.10 Mainly Alpha › Orthogonal Bundle › Fic-like fold › Fido-like domain 0.62 44.0 2.96e-01 76.0% 41.9%
2pq7A00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.61 46.0 3.53e-01 81.3% 72.8%
3cxbA03 1.10.1740.30 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Secreted effector protein SifA helical domain 0.60 42.0 4.17e-01 74.7% 77.8%
1eyvB00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.60 49.0 4.06e-01 89.3% 92.5%
5ysqB00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.59 50.0 3.48e-01 98.7% 91.4%
5ceeA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.58 47.0 3.35e-01 89.3% 79.7%
1h3fA02 1.10.240.10 Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase 0.58 45.0 3.97e-01 86.7% 59.8%
3e9lA02 1.20.80.40 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › Prp8 RNase H domain, fingers region 0.57 40.0 3.77e-01 74.7% 73.7%
2w0gA00 1.20.58.610 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Cdc37, Hsp90 binding domain 0.57 43.0 3.51e-01 78.7% 79.1%
2icwG01 1.20.120.390 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hla class ii histocompatibility antigen, dr alpha chain. Chain D, domain 1 0.57 48.0 4.10e-01 94.7% 80.6%
7kypB01 1.10.3470.10 Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC 0.56 40.0 2.85e-01 80.0% 60.3%
7dkaA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 45.0 3.44e-01 93.3% 52.3%
6zhiB02 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.53 39.0 3.83e-01 78.7% 91.6%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.51 39.0 3.93e-01 94.7% 80.8%
3w0oA02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.50 40.0 3.00e-01 93.3% 71.6%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4636891 4953.1.1.4 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 0.78 53.0 5.11e-01 74.7% 62.4%
4273496 4953.1.1.4 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 0.78 52.0 5.15e-01 76.0% 65.0%
3888953 4953.1.1.4 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 0.78 54.0 5.18e-01 73.3% 63.5%
5036826 4953.1.1.4 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 0.78 53.0 5.23e-01 74.7% 66.3%
3297516 4953.1.1.4 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 0.77 53.0 5.07e-01 74.7% 62.4%
4510528 4953.1.1.4 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 0.77 53.0 5.00e-01 74.7% 60.0%
4133648 4953.1.1.4 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 0.77 52.0 5.03e-01 72.0% 62.4%
4419818 4953.1.1.4 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 0.77 52.0 5.02e-01 74.7% 62.4%
4597969 4953.1.1.0 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.77 52.0 5.27e-01 74.7% 70.7%
3970102 4953.1.1.0 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.76 52.0 5.00e-01 74.7% 62.4%
3940544 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.76 58.0 5.18e-01 81.3% 76.2%
4681319 4953.1.1.4 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 0.76 52.0 4.99e-01 74.7% 62.4%
4159135 4953.1.1.4 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 0.76 52.0 5.13e-01 74.7% 66.3%
4330255 4953.1.1.4 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 0.76 52.0 4.98e-01 74.7% 62.4%
4036926 4953.1.1.4 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 0.76 52.0 5.23e-01 76.0% 70.7%
4927310 4953.1.1.4 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 0.75 51.0 4.72e-01 76.0% 55.8%
4533966 4953.1.1.4 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 0.73 50.0 4.93e-01 76.0% 66.3%
4042981 4953.1.1.4 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 0.73 51.0 4.87e-01 72.0% 63.5%
3987549 4953.1.1.4 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 0.72 49.0 4.74e-01 72.0% 62.4%
5067260 4953.1.1.4 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 0.72 49.0 4.67e-01 72.0% 66.7%
4860588 7108.1.1.0 ↗ alpha complex topology › Stl repressor, middle domain › Stl repressor, middle domain › Stl repressor, middle domain 0.71 52.0 5.57e-01 77.3% 98.5%
4987569 4953.1.1.4 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 0.71 49.0 4.55e-01 72.0% 62.1%
5031461 103.2.1.0 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone 0.71 50.0 5.04e-01 73.3% 78.7%
4520782 181.1.1.1 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.71 48.0 4.46e-01 74.7% 55.8%
5031192 4953.1.1.4 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 0.70 50.0 4.71e-01 74.7% 62.2%
2329884 4953.1.1.4 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 0.69 49.0 4.56e-01 74.7% 67.0%
4178644 4953.1.1.4 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 0.68 48.0 4.55e-01 73.3% 66.7%
5051792 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.68 53.0 4.81e-01 84.0% 67.0%
3585391 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.66 50.0 4.61e-01 80.0% 78.9%
5061574 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.64 49.0 4.97e-01 84.0% 85.3%
4672223 148.1.3.19 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 0.63 47.0 4.77e-01 80.0% 78.7%
3177468 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.62 48.0 4.68e-01 84.0% 77.6%
3929290 614.1.1.0 ↗ alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain 0.60 44.0 4.55e-01 76.0% 87.1%
3923736 551.1.1.1 ↗ alpha arrays › Hsp90 co-chaperone CDC37 middle domain › Hsp90 co-chaperone CDC37 middle domain › Hsp90 co-chaperone CDC37 middle domain › CDC37_M 0.60 42.0 3.41e-01 73.3% 67.1%
4128543 551.1.1.1 ↗ alpha arrays › Hsp90 co-chaperone CDC37 middle domain › Hsp90 co-chaperone CDC37 middle domain › Hsp90 co-chaperone CDC37 middle domain › CDC37_M 0.59 43.0 3.33e-01 74.7% 66.5%
4076240 4002.1.1.4 ↗ alpha bundles › alpha-helical domain in dehydroquinate synthase-like enzymes › alpha-helical domain in dehydroquinate synthase-like enzymes › alpha-helical domain in dehydroquinate synthase-like enzymes › DHQS_C 0.59 48.0 3.76e-01 94.7% 98.9%
3925558 551.1.1.1 ↗ alpha arrays › Hsp90 co-chaperone CDC37 middle domain › Hsp90 co-chaperone CDC37 middle domain › Hsp90 co-chaperone CDC37 middle domain › CDC37_M 0.59 42.0 3.39e-01 74.7% 72.4%
4045041 4002.1.1.4 ↗ alpha bundles › alpha-helical domain in dehydroquinate synthase-like enzymes › alpha-helical domain in dehydroquinate synthase-like enzymes › alpha-helical domain in dehydroquinate synthase-like enzymes › DHQS_C 0.58 47.0 3.69e-01 96.0% 98.4%
4932569 131.1.1.0 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like 0.57 40.0 2.96e-01 73.3% 45.9%
3880 611.5.1.1 ↗ alpha bundles › N-cbl like › Superantigen MAM N-terminal domain › Superantigen MAM N-terminal domain › MA-Mit 0.57 48.0 4.07e-01 94.7% 80.0%
5071108 1188.1.1.1 ↗ alpha bundles › ZIP zinc transporter › ZIP zinc transporter › ZIP zinc transporter › Zip 0.51 39.0 2.69e-01 81.3% 79.5%
4216647 4953.1.1.4 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 0.50 38.0 3.61e-01 85.3% 69.5%