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OR159654.1__WKW85187.1__SEA_AIKOY__25__00025

Bact-Vir

OR159654.1__WKW85187.1__SEA_AIKOY__25__00025

Identity

Accession:
OR159654 ↗
Kingdom:
phage

Quality

73.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Onyinyevirus› Mycobacterium_phage_Aikoy

TaxID: 3035368

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 49-129
PDB
Domain cluster: representative
D2 medium residues 130-182
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06810.18 best Phage_scaffold 36.0 9.80e-09 98.1% 24.1%
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5z9iA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.59 48.0 2.90e-01 92.5% 75.9%
1go4A00 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.56 39.0 2.72e-01 75.5% 32.1%
6whpA01 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.55 39.0 2.54e-01 75.5% 70.8%
1i9dA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 42.0 3.18e-01 100.0% 32.6%
4zohA05 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.52 40.0 3.08e-01 92.5% 45.9%
5e7pA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 38.0 2.69e-01 81.1% 69.9%
7r0kA02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.50 39.0 2.86e-01 86.8% 99.4%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3535881 386.1.1.145 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_ZN142 0.68 32.0 3.16e-01 77.4% 40.0%
3710953 386.1.1.20 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met 0.66 31.0 4.01e-01 79.2% 79.3%
3410422 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.63 30.0 3.64e-01 81.1% 65.7%
3406438 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.63 31.0 3.92e-01 79.2% 76.7%
4944680 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.62 47.0 2.71e-01 90.6% 63.4%
3741490 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.62 47.0 4.16e-01 88.7% 63.5%
3661482 4120.1.1.56 ↗ few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP › Myb_DNA-bind_3 0.60 42.0 3.79e-01 77.4% 57.5%
5039676 4095.1.1.1 ↗ alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N 0.56 40.0 2.74e-01 79.2% 20.4%
3357520 310.2.1.28 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › Myb_DNA-bind_3 0.56 42.0 3.75e-01 88.7% 97.6%
3805561 101.1.1.121 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.56 43.0 3.41e-01 90.6% 38.4%
3744638 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.55 40.0 3.70e-01 86.8% 70.0%
4937536 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 41.0 3.68e-01 84.9% 55.0%
3420021 101.1.1.121 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.54 42.0 3.27e-01 88.7% 37.6%
3419597 101.1.1.121 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.54 42.0 3.38e-01 94.3% 41.6%
None — 0.54 43.0 2.58e-01 92.5% 21.9%
3644046 4120.1.1.0 ↗ few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP 0.54 39.0 3.73e-01 81.1% 100.0%
4025088 109.4.1.418 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Condensin2nSMC 0.53 37.0 2.13e-01 77.4% 6.8%
3669337 376.1.2.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › zf-RING_11 0.53 38.0 3.55e-01 79.2% 97.1%
3782169 109.4.1.628 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec7-like_HUS 0.52 40.0 2.34e-01 84.9% 24.5%
3915323 386.1.1.18 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_jaz 0.52 35.0 3.54e-01 71.7% 87.3%
5078462 1075.1.2.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX 0.51 39.0 2.54e-01 84.9% 62.5%
4933534 2484.1.1.302 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.51 41.0 2.80e-01 90.6% 54.6%
3625564 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.51 28.0 3.12e-01 71.7% 67.5%
5064650 205.1.1.16 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_7 0.50 37.0 3.22e-01 90.6% 92.4%