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OR159654.1__WKW85247.1__SEA_AIKOY__85__00085

Bact-Vir

OR159654.1__WKW85247.1__SEA_AIKOY__85__00085

Identity

Accession:
OR159654 ↗
Kingdom:
phage

Quality

89.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 618-760
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1jb7A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.79 50.0 5.53e-01 83.9% 78.4%
1fguB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.79 57.0 6.16e-01 87.4% 86.3%
3kf6A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.78 58.0 5.94e-01 85.3% 79.4%
6aqgA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.77 58.0 5.88e-01 88.1% 78.7%
1xjvA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.76 53.0 5.36e-01 88.8% 71.1%
4me3A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.76 51.0 6.20e-01 83.2% 100.0%
3i7fA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.76 59.0 6.22e-01 93.7% 89.1%
3u4vA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.75 56.0 6.16e-01 88.8% 94.8%
6ro0F00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.74 48.0 5.74e-01 75.5% 94.9%
1lm0A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.74 50.0 5.89e-01 85.3% 97.0%
3en2A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.74 46.0 5.75e-01 74.8% 98.9%
3tssA02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.73 37.0 5.21e-01 70.6% 100.0%
1eovA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.72 57.0 5.96e-01 91.6% 88.1%
4egvA02 2.40.50.840 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.71 38.0 5.01e-01 79.0% 98.7%
3nbiA02 2.40.50.770 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RecQ-mediated genome instability protein Rmi1, C-terminal domain 0.70 56.0 5.82e-01 100.0% 88.9%
1x6oA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.70 39.0 4.98e-01 74.1% 97.5%
3kf8A00 2.40.50.1040 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.69 57.0 4.92e-01 85.3% 65.7%
3iayA01 2.40.50.730 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.68 42.0 5.06e-01 74.8% 90.8%
4joiA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 52.0 5.26e-01 85.3% 80.1%
4pmwA02 2.40.50.700 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.66 36.0 4.66e-01 83.2% 96.2%
1jt8A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 36.0 4.09e-01 88.1% 76.5%
3q31A00 3.10.200.10 Alpha Beta › Roll › Carbonic Anhydrase II › Alpha carbonic anhydrase 0.52 37.0 3.15e-01 72.7% 66.9%
4twlA00 3.10.200.10 Alpha Beta › Roll › Carbonic Anhydrase II › Alpha carbonic anhydrase 0.51 36.0 3.10e-01 73.4% 64.9%
3vhxF00 2.60.40.4330 Mainly Beta › Sandwich › Immunoglobulin-like › Kinesin-like protein Kif23, Arf6-interacting domain 0.51 28.0 3.25e-01 99.3% 73.5%
ECOD (86)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4965400 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.84 62.0 6.81e-01 100.0% 90.8%
5023075 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.83 55.0 5.70e-01 85.3% 71.1%
3654541 2.1.1.223 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF28721 0.81 57.0 6.52e-01 85.3% 94.5%
5076488 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.81 55.0 6.61e-01 82.5% 100.0%
3826195 2.1.1.130 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.80 52.0 6.16e-01 85.3% 94.0%
3657721 2.1.1.223 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF28721 0.80 59.0 5.84e-01 89.5% 72.7%
4454256 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.79 57.0 5.75e-01 91.6% 73.1%
3331695 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.78 51.0 5.95e-01 84.6% 90.5%
3675935 2.1.1.223 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF28721 0.78 55.0 5.73e-01 85.3% 77.0%
3350247 2.1.1.76 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.78 59.0 5.95e-01 86.7% 77.9%
3367063 2.1.1.76 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.77 58.0 4.80e-01 84.6% 46.3%
3387410 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.77 57.0 6.36e-01 97.9% 95.7%
4451383 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.77 58.0 5.78e-01 91.6% 75.9%
3661180 2.1.1.223 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF28721 0.77 48.0 5.65e-01 75.5% 89.0%
3880568 2.1.1.23 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › POT1 0.77 54.0 5.46e-01 88.8% 71.7%
3737319 2.1.1.52 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Stn1 0.76 58.0 5.79e-01 85.3% 76.6%
3314558 2.1.1.130 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.76 58.0 5.83e-01 91.6% 77.8%
3446499 2.1.1.130 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.76 56.0 6.16e-01 90.2% 90.8%
5027238 2.1.1.25 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1 0.76 45.0 4.49e-01 72.7% 57.3%
3822890 2.1.1.130 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.76 57.0 5.80e-01 92.3% 79.3%
3963148 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.75 52.0 6.16e-01 80.4% 100.0%
4580915 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.75 57.0 5.75e-01 91.6% 77.2%
3707992 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.75 57.0 5.70e-01 91.6% 76.6%
4026723 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.75 54.0 6.14e-01 84.6% 96.4%
3374948 2.1.1.130 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.75 47.0 5.64e-01 83.2% 91.0%
437095 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.75 56.0 6.16e-01 88.8% 94.8%
3296674 2.1.1.130 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.75 53.0 5.96e-01 82.5% 93.6%
3342201 2.1.1.130 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.75 54.0 6.00e-01 92.3% 93.0%
4288521 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.74 56.0 5.54e-01 88.1% 74.0%
3827585 2.1.1.130 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.74 53.0 6.19e-01 81.8% 100.0%
5015437 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.74 55.0 5.67e-01 85.3% 80.0%
3358498 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.74 46.0 5.52e-01 82.5% 90.0%
3811669 2.1.1.130 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.74 53.0 6.03e-01 84.6% 95.5%
3356276 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.74 57.0 6.11e-01 89.5% 92.0%
5025207 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.74 44.0 5.67e-01 73.4% 100.0%
3441179 2.1.1.130 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.74 57.0 6.09e-01 89.5% 92.0%
5055355 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.73 45.0 5.64e-01 74.8% 97.8%
5049658 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.73 51.0 5.93e-01 83.9% 97.1%
4129337 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.73 59.0 5.54e-01 91.6% 72.1%
3445197 2.1.1.130 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.73 53.0 5.80e-01 84.6% 90.0%
3366703 2.1.1.157 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CDC24_OB2 0.72 55.0 5.71e-01 84.6% 83.7%
3677576 2.1.1.130 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.72 55.0 5.78e-01 93.7% 86.9%
3330560 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.72 55.0 5.31e-01 88.8% 70.6%
3359808 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.72 54.0 5.68e-01 85.3% 86.2%
3642370 2.1.1.130 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.72 53.0 5.76e-01 84.6% 90.8%
3931674 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.71 54.0 6.00e-01 90.2% 98.3%
3490309 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.71 53.0 5.47e-01 84.6% 80.7%
3680383 2.1.1.130 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.71 53.0 5.75e-01 95.1% 91.7%
3444970 2.1.1.223 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF28721 0.71 49.0 5.12e-01 85.3% 76.9%
3666656 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.71 52.0 5.50e-01 95.1% 83.8%
3317763 2.1.1.130 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.70 42.0 5.21e-01 71.3% 94.4%
3222288 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 50.0 5.61e-01 81.8% 91.3%
3705888 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 52.0 5.78e-01 88.8% 98.3%
4001702 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 48.0 5.33e-01 81.1% 89.6%
3038947 2.1.1.119 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM10_OB 0.67 59.0 6.00e-01 99.3% 94.3%
3791987 2.1.1.25 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1 0.67 48.0 5.34e-01 81.1% 91.3%
3567138 2.1.1.133 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF4503 0.67 54.0 5.46e-01 83.9% 95.0%
3514098 2.1.1.25 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1 0.66 48.0 5.35e-01 81.1% 92.2%
3480547 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 49.0 5.36e-01 81.1% 92.4%
3738561 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 45.0 5.26e-01 70.6% 100.0%
3254800 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 58.0 5.66e-01 93.7% 92.9%
4028782 2.1.1.25 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1 0.65 51.0 4.97e-01 81.1% 92.9%
3417038 2.1.1.179 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REV3_N 0.64 50.0 5.31e-01 81.1% 91.2%
1280976 2.1.1.41 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RMI1_N_C 0.63 50.0 5.03e-01 97.9% 82.3%
3932593 2.1.1.179 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REV3_N 0.63 45.0 5.18e-01 72.0% 100.0%
4976869 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 45.0 4.98e-01 74.1% 89.6%
3993896 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 55.0 5.49e-01 91.6% 95.8%
3350050 2.1.1.25 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1 0.63 49.0 4.90e-01 81.8% 78.6%
3592676 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 48.0 5.13e-01 81.1% 90.4%
3704723 2.1.1.25 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1 0.63 48.0 5.12e-01 81.1% 90.4%
3585893 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 52.0 5.27e-01 90.2% 99.3%
3496491 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 43.0 4.99e-01 71.3% 100.0%
3621460 2.1.1.68 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RMI1_C 0.61 53.0 5.30e-01 91.6% 95.2%
3891602 2.1.1.276 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1, REV3_N 0.61 48.0 5.07e-01 81.1% 93.1%
4025113 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 46.0 4.92e-01 88.1% 88.8%
3788812 304.114.1.6 a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain › DNA_pol_B_exo1 0.61 47.0 3.91e-01 81.1% 75.8%
3580766 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 53.0 5.28e-01 93.0% 95.9%
3268617 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 52.0 4.70e-01 92.3% 73.7%
3579168 2.1.1.179 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REV3_N 0.58 47.0 4.55e-01 83.2% 91.0%
3728581 2.1.1.179 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REV3_N 0.57 46.0 4.61e-01 83.2% 100.0%
3214819 2.1.1.179 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REV3_N 0.56 45.0 4.57e-01 84.6% 99.3%
3679928 2.1.1.179 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REV3_N 0.55 44.0 4.66e-01 83.9% 100.0%
3189564 62.1.1.1 beta meanders › Carbonic anhydrase › Carbonic anhydrase › Carbonic anhydrase › Carb_anhydrase 0.54 38.0 3.14e-01 72.7% 62.4%
3168835 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 43.0 4.62e-01 84.6% 100.0%
3669298 62.1.1.1 beta meanders › Carbonic anhydrase › Carbonic anhydrase › Carbonic anhydrase › Carb_anhydrase 0.52 37.0 3.12e-01 72.7% 67.5%
3385695 3186.1.1.1 a+b two layers › C-terminal domain of FliK › C-terminal domain of FliK › C-terminal domain of FliK › Flg_hook 0.51 26.0 3.57e-01 95.1% 100.0%
D2 medium residues 1-126
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07733.19 best DNA_pol3_alpha 109.3 3.70e-31 80.2% 29.6%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4064450 316.1.1.17 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol3_alpha 0.90 77.0 5.80e-01 92.9% 41.5%
4156755 316.1.1.17 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol3_alpha 0.88 69.0 5.55e-01 92.9% 45.9%
4142452 316.1.1.17 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol3_alpha 0.88 75.0 5.80e-01 92.1% 44.4%
1117589 316.1.1.17 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol3_alpha 0.84 77.0 5.55e-01 96.0% 49.5%
1312437 316.1.1.17 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol3_alpha 0.81 61.0 6.85e-01 86.5% 100.0%
5078968 316.1.1.17 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol3_alpha 0.80 75.0 5.73e-01 97.6% 49.0%
D3 medium residues 161-291
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07733.19 best DNA_pol3_alpha 66.3 4.80e-18 100.0% 48.5%
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2felA00 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.57 50.0 3.79e-01 100.0% 91.4%
3nz4B03 1.10.274.20 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3 0.54 40.0 4.44e-01 90.8% 98.1%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4142452 316.1.1.17 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol3_alpha 0.84 64.0 5.00e-01 100.0% 41.2%
3969389 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.79 71.0 5.48e-01 100.0% 45.5%
1117589 316.1.1.17 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol3_alpha 0.79 70.0 5.19e-01 100.0% 39.4%
4660116 316.1.1.17 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol3_alpha 0.78 70.0 5.36e-01 100.0% 44.6%
4064450 316.1.1.17 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol3_alpha 0.77 68.0 5.26e-01 100.0% 45.6%
D4 medium residues 297-495
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF17657.7 best DNA_pol3_finger 131.5 2.70e-38 81.9% 96.4%
D5 medium residues 537-614
PDB
Domain cluster: representative
Pfam (3)
AccessionNameScoreE-valueQ covHMM cov
PF12836.14 best HHH_3 34.2 3.10e-08 69.2% 72.3%
PF14520.13 HHH_5 19.3 1.80e-03 29.5% 29.8%
PF00633.30 HHH 26.1 7.50e-06 26.9% 56.7%
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3f2bA08 1.10.150.870 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.82 69.0 5.65e-01 94.9% 51.1%
2bgwA02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.74 56.0 5.73e-01 91.0% 82.4%
3psfA01 1.10.150.850 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Spt6, helix-hairpin-helix domain 0.70 56.0 5.06e-01 94.9% 63.2%
2i5hA02 1.10.150.280 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AF1531-like domain 0.68 54.0 5.09e-01 100.0% 69.8%
1dgsA06 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.68 51.0 5.07e-01 92.3% 75.9%
8b0qA02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.66 46.0 5.06e-01 85.9% 93.3%
5tt5A05 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.65 49.0 4.96e-01 92.3% 81.8%
5kd5A01 1.10.390.30 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Peptidase M60, enhancin-like domain 3 0.57 47.0 3.72e-01 96.2% 95.0%
3tadC02 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.55 47.0 4.29e-01 98.7% 72.5%
6h5hA00 1.10.150.110 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like 0.54 44.0 4.56e-01 92.3% 98.6%
1kg2A02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.54 47.0 4.17e-01 96.2% 92.9%
3ig5A03 1.10.150.710 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Glutamate cysteine ligase subdomain 0.53 34.0 3.38e-01 98.7% 60.7%
4krdB00 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.52 43.0 3.35e-01 94.9% 75.3%
3hx0K01 1.10.150.110 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like 0.52 42.0 4.19e-01 94.9% 86.7%
1keaA02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.51 43.0 3.87e-01 96.2% 93.8%
1xngA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.50 38.0 2.82e-01 85.9% 44.1%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4270949 102.1.1.25 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_3 0.86 61.0 6.58e-01 94.9% 87.7%
3987438 102.1.1.28 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 0.82 69.0 5.38e-01 94.9% 45.2%
4228183 102.1.1.28 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 0.82 69.0 5.37e-01 94.9% 45.2%
4662943 102.1.1.28 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 0.80 73.0 5.67e-01 100.0% 78.2%
3589922 102.1.1.28 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 0.78 71.0 5.48e-01 100.0% 80.6%
4145212 102.1.1.28 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 0.78 70.0 5.57e-01 100.0% 75.5%
5032485 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.78 57.0 6.28e-01 91.0% 92.3%
3963903 102.1.1.28 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 0.77 70.0 5.31e-01 100.0% 80.6%
5053952 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.77 57.0 5.88e-01 89.7% 80.8%
4641808 102.1.1.28 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 0.77 69.0 5.20e-01 100.0% 81.1%
2961 102.1.1.24 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_2 0.76 57.0 6.12e-01 92.3% 89.7%
5041963 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.76 57.0 5.57e-01 92.3% 71.8%
3969044 102.1.1.28 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 0.76 68.0 5.02e-01 100.0% 82.5%
5035601 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.76 53.0 5.94e-01 87.2% 93.3%
4945738 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.76 53.0 5.63e-01 87.2% 81.4%
5071974 102.1.1.24 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_2 0.76 55.0 6.15e-01 89.7% 98.3%
4948197 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.75 55.0 5.98e-01 91.0% 92.3%
4985432 102.1.1.24 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_2 0.75 52.0 5.44e-01 87.2% 78.1%
4140769 102.1.1.28 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 0.73 66.0 5.09e-01 100.0% 80.0%
4997394 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.73 55.0 5.94e-01 91.0% 93.8%
3969369 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.73 64.0 5.02e-01 100.0% 75.9%
4209900 102.1.1.24 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_2 0.72 52.0 5.60e-01 87.2% 89.2%
4974337 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.72 54.0 5.52e-01 91.0% 81.3%
5058256 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.72 54.0 5.87e-01 92.3% 95.4%
4016475 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.71 52.0 5.34e-01 91.0% 80.0%
3743102 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.71 52.0 5.33e-01 89.7% 80.0%
3477129 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.71 52.0 4.86e-01 91.0% 63.2%
3729417 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.71 58.0 6.16e-01 100.0% 98.6%
3937502 102.1.1.24 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_2 0.70 52.0 5.09e-01 91.0% 71.8%
3823728 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.70 49.0 4.82e-01 87.2% 67.1%
5041781 102.1.1.24 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_2 0.69 50.0 5.44e-01 89.7% 92.3%
4173803 102.1.1.24 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_2 0.69 52.0 5.21e-01 92.3% 78.8%
4292069 102.1.1.10 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_ligase_ZBD,HHH_2 0.68 51.0 3.88e-01 92.3% 35.0%
3971169 102.1.1.24 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_2 0.68 51.0 4.42e-01 92.3% 52.5%
4432595 102.1.1.96 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH, DNA_ligase_ZBD, HHH_2, HHH_5 0.67 50.0 3.84e-01 92.3% 35.0%
3715435 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.66 49.0 5.06e-01 91.0% 82.7%
4141107 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.66 49.0 4.88e-01 91.0% 76.2%
4089961 102.1.1.24 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_2 0.65 49.0 5.02e-01 92.3% 84.0%
3968017 102.1.1.24 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_2 0.63 47.0 4.57e-01 92.3% 70.0%
3701878 101.1.10.9 alpha arrays › HTH › HTH › Cyclin-like › Cyclin 0.62 48.0 3.76e-01 85.9% 66.3%
3600385 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.60 48.0 3.53e-01 87.2% 78.2%
3603192 102.1.1.13 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DUF655 0.60 54.0 4.71e-01 98.7% 68.7%
4448176 102.1.2.24 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › UPF0758_N 0.58 44.0 4.41e-01 85.9% 78.8%
3723519 321.1.1.10 a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › Amidoligase_2 0.58 49.0 3.21e-01 97.4% 51.4%
3878856 102.1.1.1 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_1 0.57 45.0 4.62e-01 100.0% 93.3%
3397887 101.1.1.28 alpha arrays › HTH › HTH › Three-helical HTH › SWIRM 0.57 40.0 4.19e-01 83.3% 84.3%
3709061 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.55 44.0 4.61e-01 97.4% 98.6%
3801392 2498.1.1.74 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Metallopep 0.55 39.0 2.58e-01 76.9% 37.3%
3518470 102.1.1.30 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_8 0.54 46.0 4.45e-01 96.2% 83.3%
5063022 2498.1.1.10 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 0.53 45.0 3.29e-01 100.0% 50.6%
3173775 101.1.10.9 alpha arrays › HTH › HTH › Cyclin-like › Cyclin 0.53 44.0 3.38e-01 94.9% 74.9%
1414926 101.1.2.224 alpha arrays › HTH › HTH › winged helix domain › DUF6945 0.51 39.0 3.51e-01 84.6% 59.1%