←Back to structures
OR159659.1__WKW85499.1__SEA_REYNAULD_47__00047
Bact-VirOR159659.1__WKW85499.1__SEA_REYNAULD_47__00047
Identity
- Accession:
- OR159659 ↗
- Kingdom:
- phage
Quality
86.1
mean pLDDT
Taxonomy
TaxID: 3062845
Cluster
View cluster (7 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 18-108
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2kjgA00 | 1.20.120.970 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.67 | 43.0 | 4.27e-01 | 79.1% | 60.6% |
| 4ysxC00 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.65 | 45.0 | 3.82e-01 | 71.4% | 52.9% |
| 2ii2A03 | 1.10.220.10 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin | 0.63 | 36.0 | 3.57e-01 | 76.9% | 53.1% |
| 3cxbA03 | 1.10.1740.30 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Secreted effector protein SifA helical domain | 0.62 | 39.0 | 4.11e-01 | 72.5% | 70.4% |
| 1jztA00 | 3.40.50.10260 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › YjeF N-terminal domain | 0.59 | 40.0 | 2.99e-01 | 84.6% | 26.3% |
| 4od4A02 | 1.20.120.1780 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › UbiA prenyltransferase | 0.59 | 41.0 | 3.81e-01 | 72.5% | 75.6% |
| 1l3pA00 | 1.20.120.320 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Group V grass pollen allergen | 0.59 | 44.0 | 4.32e-01 | 80.2% | 82.4% |
| 1o9jC01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.59 | 42.0 | 2.95e-01 | 74.7% | 75.7% |
| 2c0kB00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.58 | 44.0 | 3.78e-01 | 81.3% | 96.0% |
| 1jt6A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.58 | 44.0 | 3.93e-01 | 83.5% | 63.5% |
| 1xo0A01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.58 | 39.0 | 3.67e-01 | 78.0% | 56.8% |
| 3f4mA00 | 1.20.1440.160 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like | 0.57 | 43.0 | 3.65e-01 | 81.3% | 68.8% |
| 3kp9A01 | 1.20.1440.130 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › VKOR domain | 0.56 | 45.0 | 3.80e-01 | 89.0% | 55.6% |
| 4ap2B01 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.56 | 43.0 | 3.90e-01 | 86.8% | 93.3% |
| 2c12A01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.54 | 39.0 | 3.55e-01 | 76.9% | 64.6% |
| 1b0bA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.54 | 40.0 | 3.50e-01 | 79.1% | 95.7% |
| 3r2qA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.54 | 40.0 | 3.82e-01 | 81.3% | 76.1% |
| 2nn4A00 | 1.10.287.760 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like | 0.54 | 35.0 | 4.15e-01 | 75.8% | 100.0% |
| 4efcA01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.53 | 43.0 | 3.91e-01 | 86.8% | 76.9% |
| 1i6zA00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.53 | 41.0 | 3.61e-01 | 82.4% | 76.3% |
| 2rldA00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.53 | 37.0 | 3.47e-01 | 72.5% | 81.6% |
| 3fnbA01 | 1.20.1440.110 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › acylaminoacyl peptidase | 0.53 | 38.0 | 3.60e-01 | 76.9% | 61.4% |
| 4jgiA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.53 | 37.0 | 3.91e-01 | 76.9% | 85.0% |
| 1b04A03 | 1.10.287.610 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.53 | 34.0 | 3.99e-01 | 80.2% | 96.8% |
| 3l1nA02 | 1.20.1280.140 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.52 | 41.0 | 4.17e-01 | 85.7% | 98.9% |
| 2i0mA01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.52 | 41.0 | 3.91e-01 | 84.6% | 89.6% |
| 4u7iA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.51 | 37.0 | 3.75e-01 | 76.9% | 82.8% |
| 1y4cA03 | 1.20.120.660 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain | 0.50 | 39.0 | 3.67e-01 | 83.5% | 91.2% |
| 3qc1A01 | 1.25.40.540 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › TAP42-like family | 0.50 | 37.0 | 3.20e-01 | 80.2% | 51.0% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4119941 | 604.12.1.51 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › 5TM-5TMR_LYT | 0.69 | 54.0 | 4.20e-01 | 82.4% | 64.7% |
| 3520694 | 192.22.1.0 ↗ | alpha bundles › Long alpha-hairpin › Ral binding domain of RLIP76 › Ral binding domain of RLIP76 | 0.66 | 49.0 | 4.36e-01 | 76.9% | 71.2% |
| 1866755 | 3277.3.1.1 ↗ | alpha arrays › Thymine dioxygenase JBP1 DNA-binding domain-like › Cas3 inhibitor AcrF3 › Cas3 inhibitor AcrF3 › AcrF3 | 0.65 | 49.0 | 4.33e-01 | 81.3% | 82.6% |
| 1674247 | 5069.1.3.1 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › Sdh_cyt | 0.63 | 44.0 | 3.70e-01 | 72.5% | 51.6% |
| 3931225 | 106.1.1.1 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › Globin | 0.59 | 41.0 | 3.35e-01 | 71.4% | 65.9% |
| 3941077 | 106.1.1.0 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like | 0.59 | 45.0 | 3.92e-01 | 81.3% | 93.6% |
| 3670388 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.59 | 44.0 | 3.96e-01 | 84.6% | 55.6% |
| 5045518 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.59 | 45.0 | 3.33e-01 | 81.3% | 57.0% |
| 3182801 | 592.2.1.2 ↗ | alpha arrays › PWI domain-like › YugE-like › YugE-like › WGG | 0.57 | 45.0 | 4.06e-01 | 85.7% | 66.9% |
| 3180261 | 6155.1.1.2 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop | 0.57 | 44.0 | 3.68e-01 | 83.5% | 77.5% |
| 3313770 | 6155.1.1.1 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv | 0.56 | 41.0 | 3.62e-01 | 76.9% | 64.4% |
| 3575812 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.56 | 33.0 | 3.39e-01 | 83.5% | 61.2% |
| 3245978 | 622.4.1.0 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related | 0.55 | 39.0 | 3.12e-01 | 73.6% | 76.2% |
| 4985440 | 604.10.1.0 ↗ | alpha bundles › Spectrin repeat-like › Enzyme IIa from lactose specific PTS, IIa-lac › Enzyme IIa from lactose specific PTS, IIa-lac | 0.54 | 38.0 | 4.10e-01 | 73.6% | 89.3% |
| 55139 | 604.3.1.1 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG | 0.53 | 41.0 | 3.73e-01 | 82.4% | 84.4% |
| 4133341 | 5069.1.1.0 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes | 0.52 | 38.0 | 3.50e-01 | 76.9% | 95.8% |
| 3407072 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.52 | 39.0 | 4.20e-01 | 82.4% | 91.3% |
| 3208649 | 604.13.1.1 ↗ | alpha bundles › Spectrin repeat-like › USP8 N-terminal domain-like › USP8 N-terminal domain-like › USP8_dimer | 0.52 | 37.0 | 3.30e-01 | 83.5% | 50.4% |
| 3370936 | 6155.1.1.0 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter | 0.52 | 37.0 | 3.73e-01 | 74.7% | 76.7% |
| 3629701 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.51 | 37.0 | 3.81e-01 | 78.0% | 80.0% |
| 3665138 | 604.3.1.0 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain | 0.51 | 39.0 | 3.81e-01 | 83.5% | 79.0% |
| 3719058 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.51 | 38.0 | 3.97e-01 | 84.6% | 88.2% |
| None | — | 0.50 | 38.0 | 3.91e-01 | 82.4% | 96.5% |
D2
medium
residues 322-377
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1x4tA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.67 | 46.0 | 4.63e-01 | 98.2% | 70.7% |
| 5aj3N01 | 1.10.287.1480 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.59 | 41.0 | 3.54e-01 | 100.0% | 46.2% |
| 2r6fA04 | 1.10.8.280 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › ABC transporter ATPase domain-like | 0.56 | 46.0 | 3.68e-01 | 94.6% | 95.8% |
| 2i6xA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.53 | 43.0 | 4.12e-01 | 98.2% | 98.6% |
| 3nivC02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.50 | 37.0 | 3.03e-01 | 83.9% | 90.3% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3939797 | 101.1.9.23 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › TdIF1_2nd | 0.57 | 49.0 | 3.98e-01 | 100.0% | 67.3% |
| 3594093 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.56 | 44.0 | 3.14e-01 | 100.0% | 33.2% |
| 3937662 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.53 | 41.0 | 2.87e-01 | 94.6% | 90.0% |
| 4381126 | 3281.1.1.1 ↗ | alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M | 0.52 | 44.0 | 2.64e-01 | 98.2% | 29.0% |
| 4277750 | 325.1.4.3 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Nicotinate/Quinolinate PRTase N-terminal domain-like › NAPRTase_N | 0.52 | 42.0 | 3.34e-01 | 100.0% | 66.4% |
| 3966747 | 325.1.4.3 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Nicotinate/Quinolinate PRTase N-terminal domain-like › NAPRTase_N | 0.50 | 41.0 | 3.20e-01 | 100.0% | 64.1% |