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OR159659.1__WKW85529.1__SEA_REYNAULD_76__00076

Bact-Vir

OR159659.1__WKW85529.1__SEA_REYNAULD_76__00076

Identity

Accession:
OR159659 ↗
Kingdom:
phage

Quality

81.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Reynauldvirus› Rhodococcus_phage_Reynauld

TaxID: 3062845

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-53
PDB
Domain cluster: rep: MN988459.1__QIG66732.1__EVB27_062__00062__D25-79
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qrdB01 2.20.25.290 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.72 47.0 5.09e-01 100.0% 89.2%
4fchA01 2.60.40.3620 Mainly Beta › Sandwich › Immunoglobulin-like › 0.70 60.0 4.66e-01 100.0% 70.6%
2qlvB02 2.20.25.290 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.69 45.0 4.86e-01 100.0% 86.8%
2zbbA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.68 49.0 4.23e-01 100.0% 46.9%
1uw0A01 3.30.1740.10 Alpha Beta › 2-Layer Sandwich › first zn-finger domain of poly(adp-ribose) polymerase-1 › Zinc finger, PARP-type 0.67 54.0 4.53e-01 100.0% 52.1%
4pkcC00 6.20.90.20 Special › Other non-globular › SH3 type barrels. › Benzylsuccinate synthase gamma subunit 0.66 48.0 5.01e-01 100.0% 95.1%
3cfuA00 2.60.40.1240 Mainly Beta › Sandwich › Immunoglobulin-like › 0.65 56.0 4.06e-01 100.0% 62.5%
3lidA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.64 51.0 3.80e-01 100.0% 33.6%
1zc3B00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 43.0 3.39e-01 100.0% 32.1%
1n2bB02 3.30.1300.10 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain 0.63 46.0 3.56e-01 100.0% 36.5%
7jrmA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 42.0 3.66e-01 100.0% 47.3%
3r87A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.60 48.0 3.73e-01 100.0% 72.0%
1ue6D00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 47.0 3.86e-01 97.9% 86.5%
4oc8A02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.58 42.0 2.94e-01 100.0% 22.1%
4cllA01 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.58 47.0 3.19e-01 100.0% 61.0%
1cukA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 45.0 4.23e-01 97.9% 97.0%
2bisA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.57 39.0 2.60e-01 97.9% 14.6%
2rs7A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 40.0 3.51e-01 97.9% 48.6%
1rfmA02 3.30.1370.60 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, NADPH binding domain 0.56 46.0 3.10e-01 100.0% 33.2%
3jtzA00 3.30.160.390 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain 0.55 38.0 3.28e-01 100.0% 44.2%
8c5yA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 46.0 3.25e-01 100.0% 35.9%
3lw3B00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.55 44.0 3.40e-01 100.0% 61.3%
8gjaD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 46.0 2.93e-01 100.0% 18.1%
3mcaB01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.55 37.0 3.04e-01 100.0% 36.5%
3ijlA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 43.0 3.41e-01 100.0% 40.7%
3f1tB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.54 43.0 3.32e-01 100.0% 66.2%
7xlqD01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 39.0 3.11e-01 100.0% 33.3%
3upuA03 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.53 43.0 3.26e-01 100.0% 35.9%
1bqsA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 41.0 3.11e-01 85.4% 38.7%
4kc3B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 46.0 3.73e-01 100.0% 60.0%
4c92C00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 40.0 3.52e-01 100.0% 53.2%
2zogA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.53 36.0 2.29e-01 75.0% 13.2%
4ybvA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 41.0 3.29e-01 100.0% 72.7%
2h2yA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.52 39.0 3.09e-01 100.0% 36.2%
3e9eB00 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.52 39.0 2.73e-01 100.0% 97.5%
3cyjA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 40.0 3.11e-01 100.0% 36.1%
4it7A00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 42.0 3.41e-01 100.0% 51.4%
3gzrB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 40.0 3.06e-01 100.0% 33.3%
4i0kA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 34.0 2.91e-01 70.8% 62.1%
2b61A01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.50 39.0 2.64e-01 100.0% 39.5%
2nlkA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.50 35.0 2.34e-01 100.0% 15.0%
4d10F01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.50 41.0 2.91e-01 97.9% 84.9%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5074491 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.80 58.0 4.23e-01 100.0% 29.6%
4954091 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.79 57.0 4.20e-01 100.0% 30.8%
3603253 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.75 54.0 4.18e-01 100.0% 35.2%
5016160 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.74 53.0 4.06e-01 100.0% 33.6%
5040605 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.73 53.0 4.03e-01 100.0% 33.6%
4931877 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.73 52.0 4.00e-01 100.0% 33.6%
5020457 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.72 52.0 3.98e-01 100.0% 33.6%
4930094 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.72 52.0 4.03e-01 100.0% 35.2%
5066013 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.72 52.0 3.99e-01 100.0% 33.6%
3273822 220.1.1.12 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Myosin_TH1 0.72 46.0 3.13e-01 97.9% 18.2%
5041942 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.72 51.0 3.91e-01 100.0% 32.2%
5020458 2.1.1.111 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ssb-like_OB 0.72 52.0 3.96e-01 100.0% 33.6%
4948168 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.72 51.0 3.94e-01 100.0% 33.6%
5051437 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.71 51.0 3.98e-01 100.0% 35.2%
4975879 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.71 51.0 3.93e-01 100.0% 33.6%
4982872 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.71 51.0 3.93e-01 100.0% 33.6%
4981503 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.71 51.0 4.09e-01 100.0% 38.9%
4942076 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.70 50.0 3.86e-01 100.0% 33.0%
4936660 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.69 59.0 5.62e-01 93.8% 81.8%
3198214 274.1.1.48 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › DUF7924 0.69 48.0 4.31e-01 100.0% 51.4%
4343392 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.68 53.0 4.09e-01 97.9% 38.2%
4948167 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 49.0 3.70e-01 100.0% 31.7%
3788285 395.1.1.4 ↗ few secondary structure elements › Midkine-related › Midkine-related › Midkine-related › Flocculin_t3 0.66 57.0 5.68e-01 100.0% 94.0%
5048982 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.66 52.0 3.30e-01 100.0% 17.9%
3175591 2.1.1.89 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dis3l2_C_term 0.65 51.0 4.12e-01 100.0% 93.0%
4950307 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 55.0 4.72e-01 100.0% 90.0%
2494924 295.1.1.4 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.62 49.0 4.25e-01 100.0% 55.1%
3218749 295.1.1.4 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.62 45.0 4.34e-01 100.0% 66.7%
4106744 222.1.1.12 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH 0.61 50.0 3.56e-01 100.0% 55.9%
4020997 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 49.0 4.02e-01 100.0% 95.4%
4288802 222.1.1.12 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH 0.61 51.0 3.66e-01 100.0% 55.5%
3927710 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.60 51.0 3.51e-01 100.0% 27.9%
3954323 2003.1.5.53 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr 0.60 41.0 2.54e-01 100.0% 10.7%
3024589 259.1.1.2 ↗ a+b two layers › Ribosomal protein L31e-like › Ribosomal protein L31e/gp120 outer domain › Ribosomal protein L31e/gp120 outer domain › Ribosomal_L31e 0.60 48.0 3.99e-01 100.0% 85.0%
4017879 3385.1.1.0 ↗ beta barrels › Allergen Alt a 1 › Allergen Alt a 1 › Allergen Alt a 1 0.60 50.0 3.80e-01 100.0% 43.9%
3396462 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.60 48.0 4.34e-01 100.0% 66.2%
5058144 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 47.0 3.57e-01 97.9% 90.7%
3708593 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 48.0 3.80e-01 100.0% 92.2%
4467756 283.1.1.3 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Pantoate_ligase 0.58 46.0 3.59e-01 100.0% 40.8%
5035149 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 46.0 3.85e-01 95.8% 91.6%
4934542 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.57 47.0 3.96e-01 97.9% 52.9%
5016164 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 46.0 3.46e-01 100.0% 83.4%
4308069 222.1.1.12 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH 0.57 45.0 3.24e-01 100.0% 56.8%
3927455 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.57 47.0 3.58e-01 100.0% 57.7%
4945684 2.1.1.76 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.57 45.0 3.62e-01 97.9% 75.7%
3558388 295.1.1.4 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.57 47.0 4.29e-01 100.0% 69.2%
3637050 222.1.1.12 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH 0.57 45.0 3.21e-01 100.0% 54.1%
5081844 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 46.0 3.59e-01 100.0% 75.0%
5031616 4.26.1.0 ↗ beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 0.56 41.0 4.00e-01 100.0% 72.7%
5066012 2.1.1.123 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CDC24_OB3 0.56 48.0 3.76e-01 100.0% 81.8%
5078764 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 47.0 3.66e-01 100.0% 81.7%
5066014 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.56 47.0 3.43e-01 100.0% 60.0%
5015538 205.1.1.22 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_21 0.56 47.0 3.63e-01 100.0% 71.3%
4844428 295.1.1.4 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.56 45.0 3.97e-01 100.0% 60.0%
4927645 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 45.0 3.49e-01 100.0% 40.0%
5055361 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.55 47.0 3.09e-01 100.0% 74.2%
4526897 222.1.1.12 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH 0.55 44.0 3.14e-01 100.0% 53.5%
4640358 222.1.1.12 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH 0.55 42.0 3.03e-01 100.0% 52.3%
3222710 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.55 46.0 3.98e-01 100.0% 60.3%
4451002 222.1.1.12 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH 0.54 42.0 3.06e-01 97.9% 76.7%
4887266 2492.1.1.42 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB, MitMem_reg 0.53 43.0 3.07e-01 95.8% 89.8%
3595817 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 41.0 3.40e-01 97.9% 94.5%
5057111 2.1.1.42 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C 0.53 45.0 3.28e-01 100.0% 42.8%
5029914 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.53 36.0 3.51e-01 100.0% 63.6%
4036788 222.1.1.12 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH 0.52 40.0 2.96e-01 100.0% 80.6%
4013325 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.51 42.0 3.25e-01 100.0% 40.8%
5073695 512.1.1.1 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.51 43.0 3.46e-01 100.0% 57.0%