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OR159664.1__WKW86089.1__SEA_JONJAMES_115__00109

Bact-Vir

OR159664.1__WKW86089.1__SEA_JONJAMES_115__00109

Identity

Accession:
OR159664 ↗
Kingdom:
phage

Quality

90.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Yvonnevirus› Gordonia_Phage_JonJames

TaxID: 3062832

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-58
PDB
Domain cluster: rep: KC595517.1__AGR47537.1__ABOUO_83__00083__D5-73
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ytlA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.88 67.0 7.07e-01 80.4% 98.0%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.84 69.0 6.63e-01 87.5% 93.5%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.83 61.0 6.42e-01 78.6% 94.1%
1vq8Q00 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.83 69.0 5.66e-01 89.3% 68.4%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.82 63.0 5.00e-01 82.1% 56.9%
3h8zA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.82 56.0 6.02e-01 71.4% 97.9%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.82 61.0 5.79e-01 78.6% 76.9%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.82 63.0 6.27e-01 82.1% 96.5%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.80 63.0 5.71e-01 83.9% 69.9%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.80 64.0 6.16e-01 87.5% 85.7%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 61.0 5.84e-01 82.1% 78.1%
1igqB00 2.30.30.150 Mainly Beta › Roll › SH3 type barrels. › KorB, C-terminal domain 0.79 57.0 5.74e-01 76.8% 80.7%
2ky9A01 2.30.30.1130 Mainly Beta › Roll › SH3 type barrels. › 0.79 59.0 5.55e-01 80.4% 88.1%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.79 56.0 5.85e-01 75.0% 88.5%
2jngA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.78 65.0 5.84e-01 91.1% 81.8%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 67.0 6.25e-01 94.6% 88.4%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 65.0 5.40e-01 96.4% 59.4%
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.74 56.0 5.80e-01 82.1% 94.0%
2e70A00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.74 63.0 5.81e-01 100.0% 73.2%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.74 55.0 5.74e-01 82.1% 98.0%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 51.0 5.09e-01 75.0% 94.9%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 58.0 5.40e-01 87.5% 88.4%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 51.0 4.60e-01 75.0% 72.2%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.72 57.0 5.18e-01 85.7% 86.7%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.72 58.0 5.57e-01 87.5% 95.2%
2rqrA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 51.0 4.05e-01 76.8% 49.6%
3feoB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 61.0 5.35e-01 96.4% 69.9%
1wzoA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.71 46.0 5.11e-01 78.6% 95.0%
7razA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.70 60.0 5.29e-01 100.0% 67.1%
3bfmA02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.70 47.0 5.18e-01 73.2% 93.0%
4ry2A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.70 54.0 4.10e-01 87.5% 42.6%
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 62.0 6.13e-01 100.0% 94.9%
3e1sA04 2.30.30.940 Mainly Beta › Roll › SH3 type barrels. › 0.68 60.0 5.60e-01 100.0% 95.7%
6o5cA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.68 53.0 4.86e-01 87.5% 90.8%
2kxcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 47.0 4.53e-01 75.0% 89.6%
2egeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 47.0 4.37e-01 78.6% 88.0%
1mbmA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.62 45.0 4.20e-01 78.6% 75.0%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.61 45.0 3.48e-01 94.6% 33.6%
4cp6A00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.60 42.0 2.51e-01 73.2% 13.8%
4g6iB01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.59 48.0 4.12e-01 89.3% 66.3%
1w0pA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 44.0 3.17e-01 85.7% 56.1%
2rowA01 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.57 38.0 3.63e-01 71.4% 80.3%
2e7zA04 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.57 49.0 3.60e-01 100.0% 59.6%
6zxfz01 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.57 42.0 3.35e-01 82.1% 89.4%
1ei5A02 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.55 46.0 4.14e-01 96.4% 75.6%
2napA04 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.52 41.0 3.49e-01 100.0% 68.4%
ECOD (83)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4369736 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.87 62.0 6.81e-01 80.4% 93.3%
5064571 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.86 71.0 5.91e-01 87.5% 72.2%
3616243 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.86 68.0 6.87e-01 83.9% 92.7%
4024914 4.1.1.249 ↗ beta barrels › SH3 › SH3 › SH3 › KOW2_Spt5 0.86 71.0 6.90e-01 87.5% 90.0%
3323530 4.1.1.118 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_15 0.86 66.0 6.28e-01 82.1% 92.3%
5011500 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.85 70.0 5.63e-01 87.5% 65.0%
3740753 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.85 65.0 6.13e-01 80.4% 75.4%
5074039 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.85 69.0 6.22e-01 87.5% 86.7%
4932696 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.85 69.0 5.59e-01 87.5% 65.0%
4946028 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.84 68.0 5.76e-01 87.5% 73.3%
4550511 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.83 63.0 6.99e-01 82.1% 100.0%
4372288 4.1.1.238 ↗ beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.83 63.0 6.17e-01 80.4% 80.0%
5075805 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 64.0 6.47e-01 82.1% 87.3%
3581896 4.1.1.249 ↗ beta barrels › SH3 › SH3 › SH3 › KOW2_Spt5 0.83 69.0 6.54e-01 89.3% 86.2%
4952887 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 65.0 6.57e-01 83.9% 89.1%
3229601 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.82 62.0 6.06e-01 80.4% 81.7%
4031578 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.82 64.0 6.76e-01 87.5% 94.0%
4534931 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.82 65.0 5.79e-01 83.9% 64.0%
4182977 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.81 66.0 6.46e-01 87.5% 81.7%
5040416 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 63.0 6.56e-01 83.9% 98.0%
5017214 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 63.0 6.38e-01 83.9% 90.9%
3651964 4.1.1.249 ↗ beta barrels › SH3 › SH3 › SH3 › KOW2_Spt5 0.81 69.0 5.30e-01 92.9% 78.3%
3590784 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.80 65.0 6.21e-01 87.5% 80.0%
3302818 4.1.1.236 ↗ beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.80 68.0 6.92e-01 100.0% 94.5%
4998329 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 66.0 6.68e-01 100.0% 90.9%
3704356 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 73.0 6.40e-01 100.0% 76.2%
4998870 4.1.1.483 ↗ beta barrels › SH3 › SH3 › SH3 › RRXRR 0.80 64.0 5.54e-01 98.2% 57.6%
5029643 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.79 65.0 5.79e-01 91.1% 85.0%
4950396 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 64.0 6.51e-01 98.2% 89.1%
3590911 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 70.0 6.50e-01 96.4% 81.4%
4997767 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 56.0 6.11e-01 75.0% 100.0%
5025079 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 62.0 6.24e-01 85.7% 94.5%
4990212 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 60.0 6.06e-01 82.1% 90.9%
3520654 4.1.1.187 ↗ beta barrels › SH3 › SH3 › SH3 › DIRP 0.79 66.0 4.77e-01 91.1% 52.0%
4010317 4.1.1.395 ↗ beta barrels › SH3 › SH3 › SH3 › PF27398 0.78 61.0 5.82e-01 94.6% 72.3%
4995901 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 63.0 6.39e-01 98.2% 89.1%
4998726 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 63.0 5.55e-01 98.2% 61.3%
4947995 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 65.0 6.55e-01 92.9% 92.7%
4348606 4.1.1.440 ↗ beta barrels › SH3 › SH3 › SH3 › PF27165 0.77 59.0 5.62e-01 82.1% 86.2%
4976896 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.77 65.0 5.48e-01 94.6% 69.5%
5030430 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 67.0 6.36e-01 96.4% 87.7%
3603357 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 65.0 6.58e-01 92.9% 94.5%
5044373 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 64.0 6.26e-01 91.1% 90.0%
4972872 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.76 54.0 5.88e-01 75.0% 97.8%
5060760 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.76 65.0 6.24e-01 96.4% 92.3%
3275302 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 68.0 6.01e-01 100.0% 78.8%
4946165 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 63.0 6.35e-01 91.1% 94.5%
5033075 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 63.0 6.43e-01 96.4% 94.5%
5058671 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 63.0 6.44e-01 96.4% 94.5%
3961546 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.75 67.0 6.36e-01 98.2% 87.7%
5034254 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.75 65.0 6.18e-01 96.4% 89.2%
4975150 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 61.0 6.01e-01 91.1% 91.7%
5050433 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 55.0 5.95e-01 82.1% 97.8%
3244497 4.1.1.187 ↗ beta barrels › SH3 › SH3 › SH3 › DIRP 0.75 66.0 4.78e-01 96.4% 52.0%
5005032 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.75 61.0 5.71e-01 91.1% 88.6%
5013892 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 63.0 6.38e-01 92.9% 96.4%
3711384 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 66.0 5.75e-01 100.0% 78.8%
5036647 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.75 65.0 6.04e-01 98.2% 81.4%
3169607 4.1.1.238 ↗ beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.75 64.0 5.74e-01 100.0% 69.3%
4980648 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 63.0 5.92e-01 96.4% 85.7%
4967397 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.74 63.0 6.10e-01 98.2% 90.8%
4357819 4.1.1.238 ↗ beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.74 65.0 6.03e-01 98.2% 77.1%
4992872 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 62.0 6.26e-01 92.9% 94.5%
4981300 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.74 62.0 5.97e-01 96.4% 86.2%
3839083 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.73 64.0 6.01e-01 100.0% 81.4%
4964421 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.73 63.0 6.02e-01 98.2% 87.7%
5064457 4.7.1.0 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.73 54.0 5.08e-01 80.4% 67.1%
5028692 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.73 63.0 6.02e-01 98.2% 87.7%
4937586 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.73 62.0 5.97e-01 98.2% 86.2%
5063537 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.71 61.0 6.02e-01 96.4% 90.0%
3961013 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.71 60.0 5.62e-01 96.4% 78.6%
5054597 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.71 54.0 4.94e-01 83.9% 89.3%
5029186 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.71 61.0 5.90e-01 100.0% 87.7%
4940501 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.70 61.0 5.83e-01 98.2% 84.6%
4957350 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 57.0 5.45e-01 91.1% 87.7%
4629022 4.1.1.238 ↗ beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.69 63.0 5.81e-01 98.2% 80.0%
2499682 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.67 52.0 4.76e-01 87.5% 89.7%
5064404 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.66 54.0 5.28e-01 92.9% 81.7%
3251994 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.66 48.0 3.75e-01 80.4% 39.5%
4027309 73.1.1.1 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.65 47.0 4.11e-01 80.4% 100.0%
2034120 5.1.3.36 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › CyRPA 0.58 47.0 3.01e-01 96.4% 32.4%
5015989 239.1.1.7 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Lhr_WH 0.56 48.0 4.85e-01 94.6% 98.2%
3281552 881.4.1.3 ↗ a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB › DUF4245 0.52 43.0 3.34e-01 96.4% 97.0%
D2 high residues 63-135
PDB
Domain cluster: rep: NC_041971.1__YP_009605087.1__FDH96_gp097__00097__D2-76