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OR159664.1__WKW86160.1__SEA_JONJAMES_187__00181

Bact-Vir

OR159664.1__WKW86160.1__SEA_JONJAMES_187__00181

Identity

Accession:
OR159664 ↗
Kingdom:
phage

Quality

77.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Yvonnevirus› Gordonia_Phage_JonJames

TaxID: 3062832

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 4-38
PDB
D2 medium residues 43-86
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1a62A01 1.10.720.10 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.89 74.0 7.31e-01 90.9% 87.0%
1y02A01 1.10.720.140 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.84 71.0 5.83e-01 93.2% 53.8%
2ld7A00 6.10.160.20 Special › Helix non-globular › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.84 69.0 5.35e-01 95.5% 42.6%
3l0oA01 1.10.720.10 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.84 72.0 7.05e-01 100.0% 89.8%
1e7lA02 1.10.720.10 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.82 70.0 6.59e-01 100.0% 80.0%
2hjqA02 1.10.720.10 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.81 67.0 6.33e-01 93.2% 77.4%
7fsfA02 3.30.56.80 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.76 59.0 5.13e-01 86.4% 56.5%
2of5H00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.72 60.0 4.74e-01 100.0% 57.0%
1sxjD03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.69 55.0 4.60e-01 100.0% 79.1%
2n00A00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.69 58.0 4.64e-01 100.0% 50.5%
4kjmA02 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.68 46.0 4.39e-01 72.7% 85.5%
3ecqA07 6.10.140.660 Special › Helix non-globular › Helix Hairpins › 0.63 43.0 4.34e-01 72.7% 100.0%
3qv2A02 3.90.120.10 Alpha Beta › Alpha-Beta Complex › DNA Methylase; Chain A, domain 2 › DNA Methylase, subunit A, domain 2 0.63 49.0 3.72e-01 93.2% 61.7%
1ax4A02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.63 50.0 3.23e-01 100.0% 98.1%
2dpmA02 1.10.1020.10 Mainly Alpha › Orthogonal Bundle › Adenine-specific Methyltransferase; domain 2 › Adenine-specific Methyltransferase, Domain 2 0.61 47.0 3.70e-01 88.6% 72.8%
7lwzB01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.57 38.0 2.56e-01 100.0% 16.5%
3bg1B03 1.25.40.690 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.56 44.0 3.54e-01 90.9% 78.3%
2icwG02 1.10.10.530 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › mam-mhc complex, Chain D, Domain 2 0.50 34.0 2.83e-01 90.9% 36.0%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3724166 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.96 86.0 7.36e-01 100.0% 64.6%
3477985 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.94 82.0 6.83e-01 93.2% 58.6%
4260463 130.1.1.3 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N 0.94 78.0 7.77e-01 88.6% 86.7%
3590596 130.1.1.3 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N 0.94 79.0 7.85e-01 90.9% 88.9%
3336810 130.1.1.3 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N 0.93 81.0 8.08e-01 93.2% 91.1%
4623858 130.1.1.3 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N 0.93 80.0 7.99e-01 93.2% 91.1%
4136263 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.93 80.0 7.95e-01 95.5% 91.1%
3943133 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.91 76.0 7.57e-01 88.6% 86.7%
3467974 130.1.1.3 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N 0.91 76.0 7.96e-01 90.9% 97.5%
4616848 130.1.1.3 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N 0.90 74.0 7.36e-01 93.2% 86.7%
3769015 130.1.1.2 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › LEM 0.89 82.0 7.85e-01 100.0% 92.0%
3702963 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.89 80.0 5.87e-01 100.0% 40.0%
4433184 130.1.1.3 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N 0.89 78.0 7.19e-01 100.0% 76.4%
3472431 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.89 75.0 7.80e-01 93.2% 100.0%
3709590 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.89 79.0 5.43e-01 100.0% 31.4%
3612921 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.88 73.0 6.73e-01 90.9% 72.7%
1826874 130.1.1.10 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP30_Sin3_bdg 0.88 68.0 6.17e-01 86.4% 63.8%
3712494 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.87 77.0 7.12e-01 97.7% 78.2%
5053068 130.1.1.3 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N 0.87 72.0 7.53e-01 90.9% 100.0%
3172901 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.87 64.0 6.99e-01 79.5% 100.0%
4650016 3949.1.1.1 ↗ alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › IPPT 0.87 78.0 6.77e-01 100.0% 72.3%
4428371 130.1.1.3 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N 0.87 76.0 7.58e-01 100.0% 93.3%
4292699 130.1.1.3 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N 0.87 72.0 7.19e-01 93.2% 88.9%
3880607 130.1.1.31 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › RNF34L-like_3rd 0.87 72.0 6.66e-01 93.2% 72.7%
3512653 130.1.1.2 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › LEM 0.86 78.0 7.20e-01 100.0% 83.6%
3838872 130.1.1.3 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N 0.86 78.0 7.20e-01 100.0% 81.8%
3440160 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.85 77.0 7.66e-01 100.0% 97.8%
3191284 130.1.1.16 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Ish1 0.85 74.0 7.09e-01 100.0% 86.0%
3248928 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.85 69.0 6.45e-01 93.2% 72.7%
3598653 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.84 73.0 7.30e-01 100.0% 93.3%
3715853 130.1.1.31 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › RNF34L-like_3rd 0.83 70.0 6.83e-01 93.2% 85.4%
3881355 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.83 70.0 6.75e-01 93.2% 84.0%
3198528 130.1.1.16 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Ish1 0.82 70.0 6.57e-01 100.0% 78.2%
3934734 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.82 71.0 7.12e-01 97.7% 97.8%
3797432 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.82 68.0 6.43e-01 93.2% 79.2%
3127 130.1.1.7 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Endonuc-dimeris 0.82 70.0 6.63e-01 100.0% 81.5%
3614917 130.1.1.31 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › RNF34L-like_3rd 0.82 69.0 6.38e-01 93.2% 74.5%
3923899 130.1.1.15 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › PADR1_N 0.80 69.0 4.84e-01 100.0% 31.4%
3714674 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.79 66.0 6.16e-01 93.2% 83.6%
3272915 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.78 69.0 6.41e-01 100.0% 83.6%
4194676 632.2.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.74 62.0 5.70e-01 90.9% 72.7%
3683614 524.1.1.8 ↗ alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p › RabGAP-TBC, RabGap-TBC_2 0.70 53.0 3.50e-01 88.6% 18.6%
4543541 101.8.1.2 ↗ alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2 0.70 59.0 4.06e-01 100.0% 34.5%
3819046 524.1.1.1 ↗ alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p › RabGAP-TBC 0.69 56.0 3.59e-01 93.2% 49.3%
3227958 101.1.2.106 ↗ alpha arrays › HTH › HTH › winged helix domain › Tam41_Mmp37 0.68 59.0 4.05e-01 100.0% 28.4%
4027117 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.66 53.0 5.05e-01 100.0% 86.2%
3563151 101.1.2.106 ↗ alpha arrays › HTH › HTH › winged helix domain › Tam41_Mmp37 0.65 50.0 3.57e-01 100.0% 25.8%
5030095 192.4.1.0 ↗ alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.62 48.0 4.04e-01 86.4% 69.3%
3799493 109.4.1.801 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › zf-C3HC4_3 0.61 41.0 2.48e-01 72.7% 23.7%
3276922 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.54 37.0 3.54e-01 100.0% 60.0%
5019807 101.1.2.894 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF2240 0.52 42.0 3.07e-01 97.7% 46.9%