←Back to structures

OR159664.1__WKW86170.1__SEA_JONJAMES_197__00191

Bact-Vir

OR159664.1__WKW86170.1__SEA_JONJAMES_197__00191

Identity

Accession:
OR159664 ↗
Kingdom:
phage

Quality

76.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Yvonnevirus› Gordonia_Phage_JonJames

TaxID: 3062832

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-64
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24230.2 best Phage_zn_bind_6 72.2 4.30e-20 100.0% 85.9%
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1i82A00 2.60.40.1190 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 47.0 3.34e-01 89.1% 49.7%
4j27A02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.59 42.0 3.71e-01 81.8% 48.3%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 47.0 3.62e-01 89.1% 67.7%
2vseA04 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.58 41.0 3.18e-01 80.0% 95.1%
2xnjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.55 43.0 3.61e-01 90.9% 58.7%
2hsiA01 2.60.40.1590 Mainly Beta › Sandwich › Immunoglobulin-like › Peptidoglycan hydrolase domains 0.55 42.0 3.81e-01 90.9% 61.0%
3vynA01 2.60.40.3780 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 42.0 3.72e-01 89.1% 59.8%
5xukA00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.53 39.0 3.29e-01 89.1% 60.0%
3ty2A00 3.40.1210.10 Alpha Beta › 3-Layer(aba) Sandwich › Stationary-phase Survival Protein Sure Homolog; Chain: A, › Survival protein SurE-like phosphatase/nucleotidase 0.52 41.0 2.83e-01 94.5% 42.4%
3lxqA01 3.30.1120.80 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.52 37.0 3.14e-01 76.4% 76.8%
3tssA02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 33.0 3.10e-01 100.0% 49.3%
4xtvB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.52 37.0 3.88e-01 76.4% 91.7%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 33.0 3.10e-01 70.9% 52.2%
2q18X01 3.10.330.40 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.51 36.0 3.39e-01 76.4% 95.7%
2bddA00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.51 39.0 3.19e-01 92.7% 51.2%
4w8qA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.51 41.0 2.86e-01 96.4% 41.0%
2kcqA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.50 40.0 3.00e-01 90.9% 52.3%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3925225 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.82 36.0 4.50e-01 87.3% 65.7%
4016125 237.1.1.4 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA 0.71 56.0 4.47e-01 90.9% 87.5%
3266832 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.68 55.0 4.90e-01 90.9% 62.5%
3276828 11.1.1.698 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_TgrO1 0.67 53.0 4.67e-01 92.7% 57.6%
3271759 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.67 52.0 4.58e-01 90.9% 56.5%
5035446 2.1.1.9 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e 0.62 36.0 3.69e-01 100.0% 56.4%
4497782 11.1.1.587 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › VEGFR1-3_N_Ig-like 0.62 50.0 4.24e-01 89.1% 54.4%
1248302 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.59 42.0 3.61e-01 81.8% 43.9%
3271339 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 46.0 4.36e-01 89.1% 87.1%
3988099 11.1.4.11 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › PUD 0.59 48.0 4.02e-01 96.4% 59.0%
3839509 1.1.5.16 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › MreC 0.58 47.0 3.42e-01 100.0% 33.8%
4048663 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.58 41.0 4.32e-01 76.4% 100.0%
2883197 12.1.1.25 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Fucosidase_C 0.56 42.0 3.53e-01 85.5% 46.6%
2772527 247.1.1.1 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.55 41.0 3.76e-01 100.0% 57.8%
4185700 2.1.1.18 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.53 30.0 3.09e-01 100.0% 50.9%
3598700 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.52 41.0 2.44e-01 89.1% 20.6%
1807495 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 36.0 3.67e-01 74.5% 92.5%
2643562 207.2.1.15 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › TPS 0.51 40.0 2.81e-01 96.4% 39.8%
4296623 11.1.1.178 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2 0.51 44.0 3.56e-01 100.0% 70.0%
5016556 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 38.0 3.37e-01 87.3% 72.2%