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OR159670.1__WKW86758.1__SEA_WONDERBOY_31__00031

Bact-Vir

OR159670.1__WKW86758.1__SEA_WONDERBOY_31__00031

Identity

Accession:
OR159670 ↗
Kingdom:
phage

Quality

95.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Korravirus› Arthrobacter_phage_WonderBoy

TaxID: 3062831

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-70
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 57.0 5.32e-01 100.0% 76.2%
5c7qB00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.67 46.0 3.38e-01 73.1% 66.1%
1h6hA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.64 47.0 3.66e-01 77.6% 68.5%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 55.0 5.42e-01 100.0% 93.1%
2wweA01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.62 45.0 3.93e-01 77.6% 80.8%
3u4vA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 47.0 4.01e-01 85.1% 83.6%
4ak1A02 2.30.30.1270 Mainly Beta › Roll › SH3 type barrels. › 0.61 42.0 4.34e-01 73.1% 76.6%
2l2fA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.57 47.0 4.11e-01 94.0% 85.2%
1z47A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 39.0 4.34e-01 77.6% 95.9%
7tzoA01 1.10.1070.11 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain 0.56 43.0 3.29e-01 86.6% 98.9%
4c08A02 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.55 42.0 3.17e-01 85.1% 98.4%
2czoA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.55 41.0 3.36e-01 82.1% 81.5%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 41.0 4.23e-01 94.0% 90.6%
2jzlA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.53 44.0 3.80e-01 94.0% 83.8%
4hj1A01 2.60.98.50 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › 0.52 44.0 3.35e-01 97.0% 72.9%
2ciuA00 3.10.450.320 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Mitochondrial import inner membrane translocase subunit Tim21 0.52 42.0 3.60e-01 95.5% 91.9%
6htnA01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.51 42.0 3.48e-01 97.0% 53.3%
1b9mA03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.51 40.0 3.98e-01 86.6% 85.9%
1vzyA01 3.55.30.10 Alpha Beta › 3-Layer(bab) Sandwich › Hsp33 domain › Hsp33 domain 0.51 42.0 3.05e-01 100.0% 84.2%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.51 37.0 3.78e-01 85.1% 80.6%
1lyvA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.51 42.0 2.82e-01 95.5% 42.4%
2jjdF02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.51 41.0 2.82e-01 92.5% 39.7%
1vq0A01 3.55.30.10 Alpha Beta › 3-Layer(bab) Sandwich › Hsp33 domain › Hsp33 domain 0.50 41.0 2.99e-01 100.0% 83.7%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
6235 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.65 45.0 3.22e-01 71.6% 64.0%
3596287 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.65 52.0 3.26e-01 89.6% 32.1%
3886492 4.1.1.154 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4772 0.64 53.0 5.19e-01 98.5% 84.0%
4954874 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 50.0 4.81e-01 95.5% 76.0%
3669779 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.62 45.0 3.60e-01 77.6% 75.7%
3737837 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 51.0 5.17e-01 95.5% 96.9%
4050042 4.1.1.441 ↗ beta barrels › SH3 › SH3 › SH3 › PF26332 0.61 54.0 5.09e-01 100.0% 91.3%
3592790 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.61 53.0 4.53e-01 100.0% 73.6%
3726361 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 48.0 4.34e-01 86.6% 75.6%
3591306 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 52.0 5.22e-01 100.0% 98.6%
3485387 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 52.0 5.08e-01 100.0% 96.0%
4958552 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 44.0 3.72e-01 82.1% 59.1%
4819138 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 36.0 4.00e-01 70.1% 87.2%
4969694 4200.1.1.0 ↗ beta barrels › YmcC-like › YmcC-like › YmcC-like 0.56 44.0 3.39e-01 89.6% 37.1%
3431181 2003.1.2.5 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like 0.56 46.0 2.95e-01 92.5% 67.0%
3709548 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.55 46.0 3.71e-01 91.0% 68.5%
4483150 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.55 41.0 3.14e-01 79.1% 65.6%
3805876 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.55 45.0 3.01e-01 97.0% 29.2%
3297629 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.55 42.0 4.06e-01 86.6% 80.0%
3469876 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.54 45.0 2.92e-01 98.5% 68.2%
None — 0.54 44.0 2.84e-01 89.6% 29.2%
3926676 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.54 42.0 3.38e-01 89.6% 75.3%
4939488 2484.1.1.34 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.53 38.0 2.54e-01 77.6% 18.3%
4988668 11.1.1.33 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arch_flagellin 0.53 38.0 2.92e-01 76.1% 88.7%
4988666 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 37.0 2.85e-01 74.6% 90.3%
3628462 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.53 36.0 3.79e-01 71.6% 88.3%
2754601 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.53 45.0 3.68e-01 100.0% 91.1%
3244230 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.53 40.0 3.19e-01 85.1% 90.0%
3685219 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 40.0 3.25e-01 86.6% 62.8%
3627521 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.52 39.0 3.46e-01 82.1% 63.0%
4012405 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.51 43.0 2.68e-01 97.0% 15.8%
3690464 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.51 41.0 3.13e-01 97.0% 36.4%
3368394 4325.1.1.11 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › PF27041 0.51 38.0 3.47e-01 83.6% 74.7%
4653150 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.51 43.0 3.75e-01 100.0% 70.0%