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OR159674.1__WKW87091.1__SEA_NICOLE72_54__00054
Bact-VirOR159674.1__WKW87091.1__SEA_NICOLE72_54__00054
Identity
- Accession:
- OR159674 ↗
- Kingdom:
- phage
Quality
75.9
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Hodgkinviridae›
Meganvirus›
Microbacterium_phage_Nicole72
TaxID: 3062838
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 19-96
Domain cluster:
rep: MK291445.1__AZV00440.1__pyei1_p23__00023__D17-97
D2
high
residues 140-187
Domain cluster:
representative
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ilkA02 | 1.10.8.590 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.83 | 73.0 | 6.52e-01 | 100.0% | 85.3% |
| 2fe3B01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.82 | 59.0 | 4.76e-01 | 75.0% | 100.0% |
| 2p1aB01 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.71 | 58.0 | 4.27e-01 | 100.0% | 37.0% |
| 1on2A02 | 1.10.60.10 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Iron dependent repressor, metal binding and dimerisation domain | 0.71 | 59.0 | 5.55e-01 | 100.0% | 81.0% |
| 1fcqA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.70 | 46.0 | 2.75e-01 | 97.9% | 10.2% |
| 3ddeB00 | 1.20.910.10 | Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like | 0.68 | 59.0 | 3.79e-01 | 100.0% | 90.0% |
| 2fnaA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.66 | 50.0 | 4.31e-01 | 87.5% | 52.6% |
| 3k8pC02 | 1.10.357.150 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › | 0.65 | 45.0 | 3.00e-01 | 75.0% | 18.4% |
| 3d36B02 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.65 | 44.0 | 4.06e-01 | 79.2% | 55.7% |
| 4bbrM00 | 1.10.472.170 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › | 0.65 | 51.0 | 3.48e-01 | 91.7% | 37.3% |
| 2z4sA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.64 | 50.0 | 4.40e-01 | 91.7% | 58.3% |
| 4hkaA02 | 1.10.287.3810 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.64 | 45.0 | 4.40e-01 | 75.0% | 68.6% |
| 1c9bA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.64 | 49.0 | 4.08e-01 | 91.7% | 75.3% |
| 2oxlA00 | 1.20.5.5260 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.63 | 43.0 | 4.00e-01 | 70.8% | 69.4% |
| 6vg5A00 | 1.10.10.930 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.63 | 47.0 | 4.13e-01 | 87.5% | 54.3% |
| 3favD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.63 | 43.0 | 3.67e-01 | 85.4% | 44.9% |
| 4ixjA01 | 3.30.1300.80 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.62 | 42.0 | 3.70e-01 | 70.8% | 50.6% |
| 6b5cA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.62 | 51.0 | 4.35e-01 | 100.0% | 54.7% |
| 6rftA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.60 | 48.0 | 3.70e-01 | 100.0% | 59.5% |
| 1aisB02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.60 | 45.0 | 3.84e-01 | 91.7% | 76.6% |
| 3mhsB00 | 1.10.246.140 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › ENY2/SUS1 | 0.59 | 42.0 | 3.37e-01 | 75.0% | 93.4% |
| 3m03B00 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.59 | 46.0 | 3.67e-01 | 85.4% | 90.5% |
| 4biuE01 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.58 | 40.0 | 3.19e-01 | 75.0% | 35.7% |
| 1gt0D00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.58 | 45.0 | 3.92e-01 | 89.6% | 70.9% |
| 4rocA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.58 | 48.0 | 3.88e-01 | 100.0% | 61.2% |
| 1nvmA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.57 | 40.0 | 3.83e-01 | 83.3% | 60.9% |
| 5ubvA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.57 | 47.0 | 4.25e-01 | 100.0% | 67.6% |
| 6pe0E01 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.57 | 45.0 | 4.48e-01 | 100.0% | 88.7% |
| 4a3vB01 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.57 | 48.0 | 4.24e-01 | 100.0% | 65.3% |
| 3a06B03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.56 | 50.0 | 4.10e-01 | 100.0% | 78.4% |
| 3mvpA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.56 | 40.0 | 2.92e-01 | 77.1% | 37.6% |
| 5svlA01 | 1.10.287.940 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › atp-gated p2x4 ion channel | 0.56 | 45.0 | 4.02e-01 | 87.5% | 80.9% |
| 1zv1A00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.56 | 42.0 | 4.08e-01 | 91.7% | 72.9% |
| 5jrtA00 | 1.10.150.50 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 | 0.55 | 45.0 | 4.16e-01 | 95.8% | 98.4% |
| 5xe7A01 | 1.20.140.160 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain | 0.53 | 42.0 | 3.19e-01 | 100.0% | 90.8% |
| 3tw6A06 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.52 | 35.0 | 3.53e-01 | 93.8% | 68.5% |
| 1st6A04 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.51 | 43.0 | 3.26e-01 | 93.8% | 91.5% |
| 7zxkC01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.51 | 42.0 | 3.06e-01 | 97.9% | 48.0% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4960529 | 632.2.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains | 0.94 | 85.0 | 8.09e-01 | 100.0% | 85.5% |
| 3432765 | 2004.1.1.56 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC | 0.86 | 72.0 | 4.95e-01 | 97.9% | 28.4% |
| 5043119 | 4970.1.1.0 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I | 0.79 | 52.0 | 4.58e-01 | 77.1% | 47.1% |
| 3570199 | 632.3.1.23 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain › SPATIAL | 0.77 | 60.0 | 5.95e-01 | 83.3% | 98.0% |
| 3190607 | 6169.1.1.59 ↗ | extended segments › Transmembrane segment of lysosome-associated membrane glycoprotein 2 › Transmembrane segment of lysosome-associated membrane glycoprotein 2 › Transmembrane segment of lysosome-associated membrane glycoprotein 2 › PLAC8 | 0.77 | 65.0 | 5.37e-01 | 95.8% | 54.1% |
| 4131842 | 101.1.3.25 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › Sigma70_r3 | 0.69 | 44.0 | 3.78e-01 | 100.0% | 41.3% |
| 3350513 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.67 | 55.0 | 3.42e-01 | 89.6% | 20.0% |
| 3409412 | 101.1.10.19 ↗ | alpha arrays › HTH › HTH › Cyclin-like › ORC6_2nd | 0.66 | 53.0 | 4.26e-01 | 89.6% | 81.1% |
| 3385989 | 101.1.6.0 ↗ | alpha arrays › HTH › HTH › TrpR | 0.66 | 52.0 | 4.61e-01 | 91.7% | 60.0% |
| 3603655 | 2004.1.1.66 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase_2 | 0.66 | 51.0 | 3.16e-01 | 91.7% | 14.2% |
| 4253264 | 101.1.1.29 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3 | 0.64 | 41.0 | 3.58e-01 | 100.0% | 41.3% |
| 4458447 | 148.1.3.21 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_4 | 0.64 | 52.0 | 4.59e-01 | 91.7% | 61.4% |
| 3602256 | 101.1.2.542 ↗ | alpha arrays › HTH › HTH › winged helix domain › ATPase_2 | 0.64 | 51.0 | 4.47e-01 | 91.7% | 57.3% |
| 4089409 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.64 | 47.0 | 4.12e-01 | 85.4% | 50.0% |
| 3750083 | 142.1.1.17 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › SPATIAL | 0.64 | 52.0 | 4.92e-01 | 93.8% | 100.0% |
| 3639520 | 219.1.1.9 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C12 | 0.64 | 53.0 | 3.24e-01 | 93.8% | 15.0% |
| 4121495 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.64 | 47.0 | 4.17e-01 | 85.4% | 53.3% |
| 4160153 | 148.1.3.222 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF27254 | 0.64 | 49.0 | 4.39e-01 | 91.7% | 60.0% |
| 3515630 | 4953.1.1.34 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › HAD_2 | 0.63 | 45.0 | 3.46e-01 | 75.0% | 57.4% |
| 3590755 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.63 | 43.0 | 3.94e-01 | 72.9% | 56.7% |
| 2754206 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.62 | 50.0 | 3.93e-01 | 89.6% | 68.0% |
| 5053417 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.62 | 51.0 | 3.71e-01 | 97.9% | 51.3% |
| 4961655 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.62 | 53.0 | 4.34e-01 | 100.0% | 77.9% |
| 3412881 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.62 | 52.0 | 4.55e-01 | 100.0% | 90.0% |
| 4452303 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.62 | 48.0 | 4.26e-01 | 81.2% | 70.8% |
| 3869754 | 109.16.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › TROVE domain-like › TROVE domain-like › TROVE | 0.62 | 48.0 | 2.81e-01 | 85.4% | 10.4% |
| 3592580 | 190.1.1.0 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box | 0.62 | 43.0 | 4.12e-01 | 79.2% | 61.7% |
| 3330762 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.60 | 50.0 | 3.88e-01 | 97.9% | 61.7% |
| 3511810 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.60 | 44.0 | 4.51e-01 | 91.7% | 93.3% |
| 3965373 | 101.1.3.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like | 0.59 | 45.0 | 3.94e-01 | 81.2% | 95.7% |
| 4978149 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.59 | 49.0 | 4.06e-01 | 97.9% | 81.1% |
| 3333415 | 148.1.3.19 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 | 0.57 | 43.0 | 4.15e-01 | 91.7% | 75.0% |
| 3269341 | 101.1.10.22 ↗ | alpha arrays › HTH › HTH › Cyclin-like › ORC6 | 0.57 | 40.0 | 3.48e-01 | 81.2% | 78.9% |
| 4594380 | 148.1.3.49 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Hda_lid | 0.57 | 50.0 | 4.18e-01 | 100.0% | 58.7% |
| 5029950 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 44.0 | 4.28e-01 | 87.5% | 78.2% |
| 4002075 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.55 | 42.0 | 3.86e-01 | 85.4% | 87.7% |
| 4613072 | 101.1.2.721 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2, PF27113 | 0.55 | 47.0 | 3.29e-01 | 100.0% | 58.2% |
| 3693312 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.54 | 45.0 | 4.16e-01 | 89.6% | 71.7% |
| 5014461 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 42.0 | 4.39e-01 | 93.8% | 88.9% |
| 5038207 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 36.0 | 2.82e-01 | 77.1% | 42.5% |
| 5041695 | 101.1.2.110 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_IclR | 0.50 | 39.0 | 3.43e-01 | 89.6% | 57.1% |
| 5031872 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 39.0 | 3.60e-01 | 83.3% | 66.7% |
| 4943153 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.50 | 39.0 | 2.77e-01 | 97.9% | 36.0% |
| 3226769 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.50 | 45.0 | 3.95e-01 | 100.0% | 98.6% |