←Back to structures
OR159674.1__WKW87113.1__SEA_NICOLE72_76__00076
Bact-VirOR159674.1__WKW87113.1__SEA_NICOLE72_76__00076
Identity
- Accession:
- OR159674 ↗
- Kingdom:
- phage
Quality
81.2
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Hodgkinviridae›
Meganvirus›
Microbacterium_phage_Nicole72
TaxID: 3062838
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-52
Domain cluster:
representative
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2iqcA00 | 1.25.40.490 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.72 | 64.0 | 4.29e-01 | 100.0% | 27.2% |
| 4jxtA00 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.70 | 60.0 | 4.45e-01 | 100.0% | 38.5% |
| 2rn7A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 57.0 | 5.22e-01 | 100.0% | 75.8% |
| 6n2nA01 | 3.40.920.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.66 | 56.0 | 3.84e-01 | 100.0% | 28.1% |
| 2rg8A00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.66 | 54.0 | 3.95e-01 | 100.0% | 31.3% |
| 3h5tA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.66 | 44.0 | 4.44e-01 | 100.0% | 70.2% |
| 2ii2A02 | 1.10.220.10 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin | 0.66 | 55.0 | 5.19e-01 | 97.9% | 77.6% |
| 2af7D00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.65 | 52.0 | 4.06e-01 | 97.9% | 43.0% |
| 3d7iB00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.65 | 51.0 | 4.24e-01 | 97.9% | 51.0% |
| 2dceA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 50.0 | 4.57e-01 | 100.0% | 69.7% |
| 4mduA02 | 1.10.220.10 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin | 0.64 | 54.0 | 4.57e-01 | 100.0% | 56.1% |
| 1l6nA02 | 1.10.375.10 | Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein | 0.64 | 52.0 | 3.83e-01 | 95.7% | 33.6% |
| 2vqxA02 | 1.10.390.10 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 | 0.63 | 53.0 | 3.75e-01 | 100.0% | 66.5% |
| 2fe3B01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 49.0 | 4.32e-01 | 100.0% | 62.4% |
| 4evfA02 | 1.10.220.10 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin | 0.60 | 49.0 | 4.33e-01 | 100.0% | 60.8% |
| 2dkzA01 | 1.10.150.50 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 | 0.59 | 51.0 | 4.70e-01 | 100.0% | 91.8% |
| 3oziB00 | 3.40.50.10140 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Toll/interleukin-1 receptor homology (TIR) domain | 0.59 | 49.0 | 3.45e-01 | 100.0% | 81.0% |
| 3lsjA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.59 | 46.0 | 3.44e-01 | 100.0% | 54.9% |
| 6ks6q01 | 1.10.560.10 | Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain | 0.59 | 50.0 | 3.16e-01 | 100.0% | 61.2% |
| 1ddqD02 | 1.10.274.100 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › RNA polymerase Rpb1, domain 3 | 0.58 | 49.0 | 3.39e-01 | 97.9% | 52.2% |
| 2ntxA02 | 1.20.58.1310 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › PRONE domain, subdomain 2 | 0.58 | 48.0 | 3.84e-01 | 97.9% | 55.3% |
| 7ccmB01 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.57 | 47.0 | 3.46e-01 | 100.0% | 48.3% |
| 4u2xF00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.57 | 48.0 | 3.30e-01 | 97.9% | 50.3% |
| 3zheA02 | 1.25.40.760 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.57 | 48.0 | 3.20e-01 | 97.9% | 64.3% |
| 2of7A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.56 | 44.0 | 3.21e-01 | 89.4% | 56.4% |
| 1bqbA02 | 1.10.390.10 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 | 0.56 | 48.0 | 3.46e-01 | 100.0% | 38.9% |
| 2wwwC01 | 1.20.5.170 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.56 | 46.0 | 4.50e-01 | 97.9% | 88.5% |
| 2ra1A03 | 1.20.58.770 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 45.0 | 4.14e-01 | 95.7% | 81.0% |
| 4malA00 | 1.20.58.2200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 44.0 | 4.09e-01 | 95.7% | 78.0% |
| 2yw6B00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.51 | 43.0 | 3.08e-01 | 97.9% | 46.7% |
| 2a6cA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.51 | 38.0 | 3.43e-01 | 91.5% | 60.5% |
| 1s35A01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.50 | 43.0 | 3.39e-01 | 97.9% | 80.2% |
| 4j8sA00 | 1.25.40.840 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › CCR4-NOT transcription complex subunit 1 TTP binding domain | 0.50 | 43.0 | 2.94e-01 | 100.0% | 63.9% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5022215 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.79 | 65.0 | 4.87e-01 | 97.9% | 37.6% |
| 5041310 | 2004.1.3.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR | 0.69 | 58.0 | 3.74e-01 | 100.0% | 20.8% |
| 8888 | 2002.1.1.149 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_67C,Glyco_hydro_67M | 0.69 | 45.0 | 2.55e-01 | 100.0% | 5.8% |
| 3731650 | 176.1.1.0 ↗ | alpha arrays › Annexin › Annexin › Annexin | 0.69 | 59.0 | 4.86e-01 | 100.0% | 54.1% |
| 4017616 | 176.1.1.1 ↗ | alpha arrays › Annexin › Annexin › Annexin › Annexin | 0.68 | 59.0 | 4.79e-01 | 100.0% | 52.2% |
| 3505207 | 2004.1.3.2 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR,EKR | 0.68 | 58.0 | 3.66e-01 | 100.0% | 20.0% |
| 3582336 | 176.1.1.1 ↗ | alpha arrays › Annexin › Annexin › Annexin › Annexin | 0.67 | 57.0 | 5.05e-01 | 97.9% | 65.7% |
| 3280925 | 247.1.1.0 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase | 0.67 | 53.0 | 3.44e-01 | 100.0% | 19.8% |
| 4499345 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.66 | 53.0 | 5.27e-01 | 97.9% | 92.0% |
| 5062595 | 2004.1.3.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR | 0.66 | 56.0 | 3.55e-01 | 100.0% | 20.8% |
| 3930751 | 509.1.1.1 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH | 0.65 | 52.0 | 4.36e-01 | 100.0% | 48.4% |
| 4412437 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.65 | 52.0 | 4.43e-01 | 100.0% | 52.2% |
| 3559767 | 176.1.1.1 ↗ | alpha arrays › Annexin › Annexin › Annexin › Annexin | 0.64 | 55.0 | 4.80e-01 | 100.0% | 64.0% |
| 1725519 | 3916.1.1.1 ↗ | alpha arrays › Helical domain in PB2 › Helical domain in PB2 › Helical domain in PB2 › Flu_PB2_4th | 0.64 | 53.0 | 4.71e-01 | 97.9% | 77.8% |
| 3652435 | 601.1.2.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) | 0.62 | 44.0 | 3.20e-01 | 89.4% | 28.0% |
| 3489224 | 176.1.1.0 ↗ | alpha arrays › Annexin › Annexin › Annexin | 0.62 | 51.0 | 4.33e-01 | 97.9% | 54.1% |
| 3519172 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.62 | 48.0 | 4.82e-01 | 97.9% | 88.0% |
| 3248091 | 198.1.1.2 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 | 0.62 | 49.0 | 4.27e-01 | 100.0% | 64.7% |
| 4111394 | 176.1.1.0 ↗ | alpha arrays › Annexin › Annexin › Annexin | 0.61 | 49.0 | 4.34e-01 | 95.7% | 58.7% |
| 3907776 | 3736.1.1.0 ↗ | alpha superhelices › NLRC4 helical domain HD2 › NLRC4 helical domain HD2 › NLRC4 helical domain HD2 | 0.61 | 51.0 | 3.54e-01 | 100.0% | 37.8% |
| 4939929 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.61 | 49.0 | 3.73e-01 | 100.0% | 68.9% |
| 3235055 | 3065.1.1.2 ↗ | alpha bundles › Fatty acid- and retinoid-binding proteins › Fatty acid- and retinoid-binding proteins › Fatty acid- and retinoid-binding proteins › Gp-FAR-1 | 0.60 | 50.0 | 3.58e-01 | 100.0% | 47.1% |
| 3410327 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 50.0 | 4.18e-01 | 100.0% | 62.2% |
| 3360159 | 2007.9.1.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain › TIR | 0.58 | 51.0 | 3.51e-01 | 100.0% | 55.8% |
| 3609661 | 109.4.1.22 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N | 0.58 | 49.0 | 3.43e-01 | 95.7% | 33.3% |
| 4123065 | 191.1.1.49 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_13_2 | 0.57 | 47.0 | 3.53e-01 | 100.0% | 55.6% |
| 3217001 | 109.12.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › C-terminal domain of Ku80 › C-terminal domain of Ku80 › MAS20 | 0.57 | 45.0 | 3.95e-01 | 100.0% | 55.3% |
| 3258509 | 616.1.1.42 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › PF29155 | 0.57 | 45.0 | 3.85e-01 | 97.9% | 53.8% |
| 3388837 | 109.4.1.129 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Leuk-A4-hydro_C | 0.56 | 45.0 | 3.32e-01 | 95.7% | 30.2% |
| 3188597 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.55 | 41.0 | 3.28e-01 | 83.0% | 41.1% |
| 3580282 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.54 | 45.0 | 3.44e-01 | 95.7% | 64.2% |
| 4939044 | 109.4.1.207 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 | 0.53 | 43.0 | 3.16e-01 | 91.5% | 33.3% |
| 5053142 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 41.0 | 3.26e-01 | 100.0% | 45.0% |
| 3942852 | 3636.1.1.0 ↗ | a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain | 0.52 | 44.0 | 3.00e-01 | 97.9% | 63.9% |