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OR159675.1__WKW87181.1__SAVBUCKETDAWG_54__00054

Bact-Vir

OR159675.1__WKW87181.1__SAVBUCKETDAWG_54__00054

Identity

Accession:
OR159675 ↗
Kingdom:
phage

Quality

82.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Stackebrandtviridae› Wizardvirus› Gordonia_phage_Savbucketdawg

TaxID: 3043928

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 24-179
PDB
Domain cluster: rep: IMGVR_UViG_2554235504_000004-2554235504-2556200050__D89-198
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2k4vA00 3.30.160.370 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 0.64 32.0 3.53e-01 83.3% 56.8%
5n1tA03 3.90.760.10 Alpha Beta › Alpha-Beta Complex › Flavocytochrome C Sulfide Dehydrogenase; Chain A Domain 3 › Flavocytochrome c sulphide dehydrogenase, flavin-binding domain 0.53 23.0 3.24e-01 73.7% 85.9%
2hngA00 3.10.420.10 Alpha Beta › Roll › Bacterial Protein-export protein SecB › SecB-like 0.52 34.0 3.81e-01 91.0% 84.0%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3602244 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.70 47.0 4.93e-01 75.6% 74.3%
5026406 2484.1.1.22 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF99 0.69 32.0 3.04e-01 85.3% 36.7%
3816855 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.65 48.0 5.34e-01 85.9% 96.0%
4004011 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.64 43.0 5.01e-01 80.8% 95.5%
4116159 330.1.1.5 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM 0.64 37.0 4.57e-01 73.7% 96.7%
3917054 241.15.1.3 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › SPC25 0.62 37.0 4.14e-01 94.2% 73.6%
3797649 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.60 41.0 4.71e-01 90.4% 98.2%
3784232 277.1.1.0 ↗ a+b two layers › PX domain › PX domain › PX domain 0.53 37.0 3.82e-01 71.2% 100.0%
5040389 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 30.0 3.31e-01 71.2% 66.9%
5001466 2484.1.1.59 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.51 42.0 3.19e-01 93.6% 39.7%
D2 high residues 198-253
PDB
Domain cluster: rep: KM083128.1__AII28201.1__PBI_SPARKY_57__00053__D196-256
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3b7hA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.73 54.0 4.90e-01 80.4% 75.0%
3bs3A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.72 53.0 5.23e-01 80.4% 90.0%
3fymA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.72 53.0 4.73e-01 80.4% 74.4%
3f51C00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.71 52.0 4.52e-01 80.4% 62.2%
2ef8A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.71 54.0 4.86e-01 87.5% 70.2%
2o38A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.70 50.0 4.86e-01 78.6% 84.6%
4ghjB00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.69 50.0 4.60e-01 80.4% 72.4%
7vjmB01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.69 50.0 4.84e-01 78.6% 93.8%
2mqkA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.69 50.0 4.85e-01 80.4% 92.3%
6qpqB00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.68 50.0 4.44e-01 78.6% 79.0%
1x57A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.68 52.0 4.51e-01 85.7% 78.0%
2ictA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.68 49.0 4.47e-01 80.4% 67.9%
4ybaA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.68 51.0 4.73e-01 85.7% 76.6%
2bnmA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.68 49.0 4.57e-01 80.4% 78.4%
2ewtA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.68 49.0 4.63e-01 80.4% 80.3%
2a6cA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.67 50.0 4.58e-01 80.4% 75.0%
1b0nA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.67 51.0 4.28e-01 85.7% 78.6%
1r69A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.67 49.0 4.77e-01 80.4% 85.7%
4pu7A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.67 48.0 4.57e-01 80.4% 78.9%
1lliA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.67 48.0 4.26e-01 80.4% 62.9%
1y7yA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.66 48.0 4.57e-01 80.4% 81.2%
2r1jL00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.66 46.0 4.50e-01 78.6% 83.3%
2auwB02 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.65 56.0 5.28e-01 100.0% 81.4%
4yg1A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.63 46.0 4.28e-01 78.6% 79.2%
3id7A00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.62 49.0 2.99e-01 89.3% 67.0%
3e9lA02 1.20.80.40 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › Prp8 RNase H domain, fingers region 0.62 48.0 4.14e-01 89.3% 81.1%
4u04A02 1.10.3290.10 Mainly Alpha › Orthogonal Bundle › Fic-like fold › Fido-like domain 0.62 48.0 3.22e-01 87.5% 99.6%
3py8A04 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.61 52.0 3.83e-01 94.6% 39.6%
2vy1A00 1.10.4180.10 Mainly Alpha › Orthogonal Bundle › Protein LEAFY › Protein LEAFY 0.60 46.0 3.40e-01 87.5% 30.7%
6sdkA01 1.10.10.2830 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.60 42.0 3.61e-01 100.0% 44.3%
3hx3A01 1.10.8.20 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › N-terminal domain of phosphatidylinositol transfer protein sec14p 0.59 46.0 4.36e-01 85.7% 83.6%
2yqzA02 1.10.8.900 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.58 41.0 3.88e-01 75.0% 61.8%
2fgeA02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.57 47.0 3.16e-01 96.4% 48.1%
1tj7A03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.56 43.0 4.06e-01 85.7% 67.6%
5i1uA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.55 46.0 2.92e-01 94.6% 52.0%
2bnkA00 1.10.8.600 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Phage phi29 replication organiser protein p16.7-like 0.55 39.0 3.86e-01 89.3% 71.9%
2qtpA00 3.30.1330.110 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › BB2672 0.54 37.0 2.76e-01 73.2% 42.9%
4hhxA00 1.20.81.30 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F 0.52 39.0 3.26e-01 82.1% 64.4%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3588628 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.78 59.0 5.84e-01 80.4% 98.3%
4997208 2004.1.1.146 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase 0.73 58.0 3.68e-01 89.3% 19.0%
4937022 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.71 52.0 5.13e-01 78.6% 85.0%
3166164 102.1.1.14 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › TfoX_C 0.71 47.0 4.03e-01 82.1% 43.3%
4956880 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.70 50.0 4.71e-01 78.6% 77.1%
3965368 101.1.4.20 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_37 0.69 51.0 4.55e-01 80.4% 70.0%
1563574 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.69 50.0 4.85e-01 80.4% 92.3%
3167163 101.1.2.65 ↗ alpha arrays › HTH › HTH › winged helix domain › Rad21_Rec8 0.68 48.0 4.10e-01 76.8% 67.4%
2766 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.67 49.0 4.77e-01 80.4% 85.7%
4147763 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.67 48.0 4.59e-01 80.4% 81.4%
4928770 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.67 48.0 5.00e-01 78.6% 90.0%
5030212 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.67 47.0 4.41e-01 75.0% 80.0%
3623379 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.66 43.0 3.60e-01 87.5% 38.9%
4448496 101.1.4.27 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › CYNS_N 0.66 48.0 4.50e-01 78.6% 80.0%
4940450 101.1.4.18 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_31 0.66 48.0 4.44e-01 80.4% 76.0%
5028787 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.65 47.0 4.40e-01 80.4% 77.3%
4962469 101.1.2.925 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7344 0.65 45.0 3.24e-01 83.9% 25.6%
3333780 4964.1.1.1 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A 0.64 48.0 3.71e-01 85.7% 67.9%
4928145 547.1.1.1 ↗ alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer 0.63 45.0 4.00e-01 75.0% 96.2%
3943356 101.1.4.19 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_35 0.63 45.0 4.24e-01 80.4% 72.0%
2970332 4964.1.1.0 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I 0.62 51.0 3.81e-01 91.1% 59.4%
4965761 101.1.2.925 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7344 0.61 43.0 3.49e-01 85.7% 37.4%
4848450 304.48.1.6 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_A 0.60 50.0 3.77e-01 94.6% 43.9%
4456463 4964.1.1.1 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A 0.59 51.0 3.89e-01 96.4% 49.2%
4985569 873.1.1.12 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › PF27313 0.59 41.0 3.19e-01 76.8% 31.1%
3689931 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.59 42.0 3.99e-01 82.1% 64.6%
4959470 873.1.1.12 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › PF27313 0.59 41.0 3.29e-01 75.0% 37.5%
3998880 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.58 45.0 3.86e-01 85.7% 88.4%
5021128 873.1.1.12 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › PF27313 0.58 41.0 3.26e-01 78.6% 34.4%
3297516 4953.1.1.4 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 0.58 43.0 3.80e-01 83.9% 52.9%
3551458 103.1.1.3 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › CRAL_TRIO_N 0.57 48.0 4.30e-01 96.4% 80.0%
4964800 101.1.2.925 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7344 0.56 44.0 3.63e-01 89.3% 65.7%
5006337 4120.1.1.0 ↗ few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP 0.55 38.0 2.98e-01 73.2% 30.4%
4059716 141.1.1.8 ↗ alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › Terpene_syn_C_2 0.55 47.0 3.01e-01 98.2% 88.7%
D3 high residues 314-366
PDB
Domain cluster: rep: KX557277.1__AOE44324.1__SEA_EYRE_44__00044__D350-412
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1kblA05 1.20.80.30 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.71 62.0 5.23e-01 100.0% 64.0%
2yqzA02 1.10.8.900 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.65 45.0 4.19e-01 73.6% 79.4%
4ep4A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.63 53.0 3.84e-01 100.0% 90.4%
2i6xA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.61 43.0 3.95e-01 75.5% 85.9%
3vygE00 1.10.472.20 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Nitrile hydratase, beta subunit 0.60 49.0 3.64e-01 100.0% 33.8%
4cc9B00 1.20.5.4730 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.60 53.0 4.35e-01 100.0% 55.1%
1gvnA00 1.10.8.130 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.60 51.0 4.42e-01 100.0% 79.3%
2m4eA00 1.20.120.1930 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein PF16691 family 0.59 46.0 4.14e-01 96.2% 80.2%
5wp3B00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.56 35.0 2.81e-01 77.4% 33.3%
4nooB00 1.10.8.1160 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.55 46.0 3.93e-01 100.0% 73.7%
2elcA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.55 33.0 3.07e-01 73.6% 47.8%
8hbfB01 3.90.1520.10 Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain 0.55 44.0 3.23e-01 100.0% 29.3%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.55 47.0 3.87e-01 100.0% 74.8%
7qaqA01 3.40.50.11710 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cyclodipeptide synthase 0.54 39.0 2.65e-01 79.2% 22.1%
6aqgD02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.54 46.0 2.86e-01 98.1% 57.3%
3v76A03 1.10.8.260 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › HI0933 insert domain-like 0.54 46.0 4.48e-01 98.1% 98.4%
2gnoA03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.54 46.0 3.80e-01 100.0% 53.0%
3h4cA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.53 46.0 3.83e-01 100.0% 71.9%
5gkoA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 45.0 2.92e-01 98.1% 25.5%
3tf8B00 3.90.1520.10 Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain 0.53 43.0 3.11e-01 100.0% 29.9%
2xzmV01 1.10.60.20 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 0.53 40.0 3.89e-01 84.9% 73.8%
5jazA03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.53 45.0 3.83e-01 100.0% 59.3%
4bjqA00 1.10.150.770 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.53 45.0 3.96e-01 96.2% 74.4%
3b9qA01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.52 41.0 3.52e-01 90.6% 52.8%
1zq9A02 1.10.8.480 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.52 44.0 3.66e-01 98.1% 88.8%
2fi1A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.51 42.0 3.95e-01 100.0% 75.0%
4x28A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.51 42.0 3.10e-01 100.0% 59.6%
3fblA00 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.50 43.0 3.74e-01 96.2% 92.7%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4869998 829.1.1.0 ↗ a+b duplicates or obligate multimers › NinB › NinB › NinB 0.84 76.0 6.88e-01 100.0% 75.7%
4010451 3788.1.1.15 ↗ alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › PF27202 0.76 67.0 5.97e-01 100.0% 72.0%
3986190 110.1.1.0 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain 0.75 65.0 5.44e-01 100.0% 60.2%
4993069 632.12.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Vng1086c-like › Vng1086c-like › UPF0058 0.69 63.0 5.93e-01 100.0% 84.1%
5065515 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.66 55.0 4.72e-01 100.0% 85.3%
3977558 639.2.1.3 ↗ alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) › BDM 0.62 43.0 4.34e-01 73.6% 96.4%
4945751 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.59 52.0 4.09e-01 100.0% 97.3%
3928650 101.1.1.315 ↗ alpha arrays › HTH › HTH › Three-helical HTH › CCD_aECM 0.58 40.0 3.92e-01 73.6% 78.3%
3848778 4120.1.1.80 ↗ few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP › PF28523, PF30984 0.58 47.0 3.81e-01 100.0% 76.7%
4942992 103.5.1.0 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like 0.57 37.0 3.86e-01 94.3% 72.0%
3490393 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.57 47.0 4.17e-01 96.2% 80.0%
3580853 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 36.0 3.45e-01 84.9% 53.8%
3353640 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.56 42.0 3.89e-01 81.1% 65.7%
4254733 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.56 45.0 3.11e-01 100.0% 26.2%
4027182 509.1.1.0 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain 0.56 39.0 3.02e-01 73.6% 56.7%
None — 0.56 41.0 2.78e-01 94.3% 19.6%
4009705 639.2.1.0 ↗ alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) 0.55 41.0 3.98e-01 84.9% 71.7%
4097425 4973.1.1.1 ↗ alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › DnaB_bind 0.55 38.0 3.57e-01 71.7% 58.5%
3545484 103.1.1.53 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › TTC3_9th 0.55 46.0 4.35e-01 100.0% 78.5%
3979958 3009.1.1.0 ↗ alpha arrays › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like 0.55 48.0 4.09e-01 100.0% 77.5%
3780993 3443.1.1.5 ↗ alpha duplicates or obligate multimers › Get5 carboxyl domain › Get5 carboxyl domain › Get5 carboxyl domain › TTC3_9th 0.55 45.0 4.37e-01 100.0% 83.3%
3228852 103.11.1.1 ↗ alpha arrays › RuvA-C › RMI1 N-terminal helical domain-related › RMI1 N-terminal helical domain-related › RMI1_N_N 0.55 43.0 4.06e-01 96.2% 72.3%
4066686 102.2.1.0 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH 0.55 47.0 4.31e-01 98.1% 88.6%
3833438 3932.1.1.0 ↗ alpha bundles › CRISPR/Cas system-associated protein Csm6 6H domain › CRISPR/Cas system-associated protein Csm6 6H domain › CRISPR/Cas system-associated protein Csm6 6H domain 0.55 38.0 3.21e-01 79.2% 43.3%
4273426 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.54 44.0 3.02e-01 100.0% 24.3%
5019483 148.1.3.20 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_2 0.54 47.0 3.81e-01 100.0% 69.5%
1584477 102.2.1.6 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › HI0933_like_1st 0.54 46.0 4.34e-01 98.1% 89.6%
3325399 108.1.1.73 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 0.53 43.0 3.52e-01 96.2% 54.9%
4932281 606.1.1.0 ↗ alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain 0.53 39.0 3.24e-01 79.2% 61.1%
4970630 109.61.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › Uncharacterized protein PF2048.1 › Uncharacterized protein PF2048.1 › MJ1579 0.53 37.0 3.39e-01 84.9% 53.3%
3651184 4957.1.1.7 ↗ a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit › MOM1 0.53 45.0 4.06e-01 100.0% 97.3%
3988204 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.53 43.0 3.21e-01 100.0% 33.8%
4562528 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.52 41.0 2.96e-01 100.0% 26.8%
3465242 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.52 41.0 2.90e-01 98.1% 26.0%
5023530 4957.1.1.0 ↗ a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit 0.52 42.0 4.13e-01 100.0% 83.3%
3803972 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.51 40.0 3.67e-01 86.8% 70.0%
5068773 148.1.3.50 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Cdc6_lid 0.51 42.0 3.68e-01 98.1% 61.2%
3544325 109.27.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain › BACK 0.50 34.0 2.84e-01 71.7% 67.0%
4927979 192.4.1.0 ↗ alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.50 37.0 3.59e-01 84.9% 70.0%