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OR159677.1__WKW87403.1__SEA_NEBULOSUS_90__00087

Bact-Vir

OR159677.1__WKW87403.1__SEA_NEBULOSUS_90__00087

Identity

Accession:
OR159677 ↗
Kingdom:
phage

Quality

84.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-70
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF23794.2 best Phage_Gp84 69.2 3.40e-19 100.0% 97.0%
CATH (54)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4h4nA00 2.60.40.3750 Mainly Beta › Sandwich › Immunoglobulin-like › 0.75 49.0 5.21e-01 100.0% 75.8%
1mhxA00 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.73 55.0 5.65e-01 89.9% 86.2%
4llgM00 3.10.20.510 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor 0.69 45.0 5.05e-01 100.0% 94.0%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.66 46.0 3.51e-01 100.0% 30.5%
3h1qA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.66 47.0 3.97e-01 75.4% 77.4%
6s2wA01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.65 49.0 4.69e-01 100.0% 68.3%
1yd0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.65 48.0 4.38e-01 100.0% 59.6%
3djcB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.65 51.0 4.72e-01 100.0% 67.0%
1mzkA00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.64 56.0 4.68e-01 100.0% 95.1%
1y9lA00 2.40.128.230 Mainly Beta › Beta Barrel › Lipocalin › Pilot protein MxiM 0.62 53.0 4.67e-01 100.0% 99.1%
3gqsB00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.61 53.0 4.74e-01 100.0% 100.0%
1yq2A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 47.0 3.94e-01 100.0% 49.6%
2pn5A05 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.60 48.0 4.32e-01 85.5% 64.6%
2la7A01 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.60 51.0 4.28e-01 100.0% 93.0%
5kfzA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.60 52.0 4.27e-01 100.0% 53.7%
3hrgA02 3.30.420.260 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, C-terminal domain 0.59 47.0 4.03e-01 88.4% 62.3%
2npnA02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.59 41.0 3.55e-01 100.0% 45.9%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.59 45.0 4.13e-01 84.1% 98.9%
2a74A05 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.59 46.0 4.03e-01 85.5% 64.8%
2j1vA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 38.0 3.10e-01 100.0% 32.6%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.58 44.0 4.08e-01 84.1% 96.8%
2je8A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 48.0 4.05e-01 100.0% 55.5%
1ti2B03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 41.0 3.87e-01 84.1% 60.7%
6cc0A01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.58 42.0 3.24e-01 76.8% 94.5%
3d33A00 2.60.40.3080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 50.0 4.57e-01 100.0% 97.9%
8b4hA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.58 50.0 3.85e-01 98.6% 61.7%
1nkiA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.57 39.0 3.25e-01 87.0% 37.3%
3hvnA01 3.90.840.10 Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain 0.57 48.0 3.60e-01 100.0% 37.8%
1xc3A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.57 48.0 4.24e-01 95.7% 90.3%
2avxA00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.57 41.0 3.15e-01 78.3% 92.4%
3mfiA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.56 47.0 3.97e-01 100.0% 55.5%
2qlcA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.56 48.0 4.04e-01 100.0% 70.6%
1q67A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 47.0 3.85e-01 100.0% 75.0%
2gupA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 44.0 4.05e-01 92.8% 90.7%
2nmlA00 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.55 47.0 4.23e-01 100.0% 70.0%
1ou5A01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.55 42.0 3.41e-01 85.5% 65.0%
2q3xA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.54 47.0 3.69e-01 95.7% 59.2%
2pw9C03 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.54 47.0 3.79e-01 98.6% 49.3%
2q18X02 3.90.850.10 Alpha Beta › Alpha-Beta Complex › Fumarylacetoacetate hydrolase; domain 2 › Fumarylacetoacetase-like, C-terminal domain 0.54 48.0 3.40e-01 100.0% 34.4%
2vzwB00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.53 49.0 3.73e-01 100.0% 63.1%
3eipA00 3.10.50.20 Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein 0.53 46.0 4.35e-01 100.0% 95.2%
1iv0A00 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.52 40.0 3.76e-01 91.3% 82.7%
5k19A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 39.0 2.52e-01 98.6% 15.2%
1ei5A03 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.52 43.0 3.93e-01 98.6% 94.1%
5ic7A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 45.0 2.93e-01 100.0% 97.9%
1wgqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 45.0 3.92e-01 100.0% 70.6%
2oseA00 2.40.100.10 Mainly Beta › Beta Barrel › Cyclophilin › Cyclophilin-like 0.52 45.0 3.32e-01 100.0% 89.2%
2r6fA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.52 38.0 3.80e-01 85.5% 77.8%
3gzkA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 41.0 3.94e-01 89.9% 100.0%
5tgfD00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.50 41.0 2.67e-01 91.3% 62.7%
1g8mA03 3.40.140.20 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › AICAR transformylase, duplication domain 0.50 41.0 3.35e-01 95.7% 59.2%
2p1jA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.50 40.0 3.27e-01 88.4% 67.4%
1jmtA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.50 41.0 3.67e-01 89.9% 87.8%
2x8kA03 2.60.120.860 Mainly Beta › Sandwich › Jelly Rolls › 0.50 42.0 3.68e-01 97.1% 64.0%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3216210 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.80 56.0 6.52e-01 100.0% 100.0%
2006900 302.4.1.0 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.75 51.0 4.45e-01 100.0% 47.1%
5035856 2484.2.1.0 mixed a+b and a/b › Ribonuclease H-like › Methylated DNA-protein cysteine methyltransferase domain › Methylated DNA-protein cysteine methyltransferase domain 0.74 49.0 4.76e-01 100.0% 62.7%
4654177 1119.1.1.1 a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW 0.74 52.0 3.51e-01 100.0% 20.8%
3237567 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.73 47.0 5.19e-01 100.0% 81.8%
5041113 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.72 47.0 4.26e-01 100.0% 51.1%
4999513 244.2.1.11 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › DUF2283 0.72 44.0 4.95e-01 100.0% 84.0%
5080205 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.72 48.0 5.38e-01 100.0% 96.0%
5071932 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.70 48.0 4.38e-01 100.0% 54.4%
2106285 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.70 51.0 4.41e-01 100.0% 50.0%
3876565 11.1.1.3 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig 0.70 49.0 3.44e-01 100.0% 24.9%
5012895 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.69 49.0 5.38e-01 100.0% 94.5%
4967222 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.69 51.0 5.40e-01 100.0% 90.0%
5081134 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.67 45.0 4.78e-01 98.6% 81.7%
4013514 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.67 49.0 4.32e-01 100.0% 52.4%
5084067 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.66 43.0 3.91e-01 100.0% 49.5%
4033537 1119.1.1.1 a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW 0.66 48.0 3.37e-01 100.0% 23.9%
3969006 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.65 41.0 4.77e-01 100.0% 100.0%
2831852 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.64 47.0 4.19e-01 100.0% 54.5%
5065436 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.64 47.0 4.86e-01 100.0% 85.9%
4004704 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.63 40.0 4.59e-01 100.0% 100.0%
4950140 9.1.1.4 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › META 0.63 55.0 4.69e-01 100.0% 98.3%
4950145 9.1.1.4 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › META 0.63 54.0 4.55e-01 100.0% 91.9%
4463006 3115.2.1.0 a+b two layers › GP2-like › GP2 › GP2 0.62 39.0 4.44e-01 97.1% 97.8%
4410522 223.1.1.7 a+b three layers › Profilin-like › sensor domains › sensor domains › Autoind_bind 0.62 44.0 3.40e-01 76.8% 95.2%
5075317 221.10.1.0 a+b two layers › beta-Grasp › FdhD/NarQ beta-grasp fold domain › FdhD/NarQ beta-grasp fold domain 0.61 48.0 4.91e-01 89.9% 92.3%
4057352 1119.1.1.1 a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW 0.61 47.0 3.22e-01 84.1% 82.4%
4089497 2484.1.1.8 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.61 49.0 3.95e-01 89.9% 90.7%
4034506 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.60 44.0 3.44e-01 78.3% 84.5%
3218243 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.60 52.0 4.87e-01 100.0% 76.5%
5079533 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.59 40.0 2.85e-01 71.0% 70.2%
1144832 2484.1.1.63 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF3822 0.59 47.0 4.18e-01 88.4% 71.0%
4061211 2484.1.1.2 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.59 46.0 3.09e-01 87.0% 72.2%
5039097 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 48.0 4.22e-01 98.6% 96.4%
4026461 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.57 48.0 3.97e-01 100.0% 51.6%
4363048 2492.1.1.9 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC 0.57 50.0 4.12e-01 100.0% 68.5%
4944215 3268.1.1.0 a+b two layers › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase 0.57 50.0 4.61e-01 100.0% 95.6%
4938024 2492.1.1.9 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC 0.57 50.0 4.21e-01 100.0% 73.3%
2530280 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.57 46.0 4.81e-01 97.1% 100.0%
3959592 2492.1.1.0 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.55 48.0 3.78e-01 100.0% 56.8%
3700429 223.2.1.6 a+b three layers › Profilin-like › profilin-like › profilin-like › uDENN 0.55 44.0 3.55e-01 88.4% 53.6%
5064594 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.55 43.0 3.26e-01 100.0% 36.8%
3290047 223.1.1.23 a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_2 0.55 51.0 3.58e-01 100.0% 47.7%
3493644 10.32.1.203 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.55 50.0 3.74e-01 100.0% 47.9%
3915206 10.32.1.203 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.55 50.0 3.67e-01 100.0% 45.1%
3167876 223.2.1.9 a+b three layers › Profilin-like › profilin-like › profilin-like › Sedlin_N 0.55 49.0 3.63e-01 100.0% 66.9%
3285401 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.54 43.0 4.22e-01 88.4% 84.0%
1031012 2492.1.1.7 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.54 46.0 3.68e-01 98.6% 46.9%
4029586 10.32.1.203 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.54 49.0 3.76e-01 100.0% 50.7%
2529893 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.53 46.0 4.59e-01 97.1% 100.0%
4030677 1116.1.1.0 a+b two layers › Polycystin-mucolipin domain › Polycystin-mucolipin domain › Polycystin-mucolipin domain 0.53 40.0 3.28e-01 87.0% 92.0%
3758198 2492.1.1.1 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.53 47.0 3.36e-01 100.0% 62.9%
None 0.52 44.0 4.08e-01 100.0% 71.6%
4566258 3018.1.1.1 a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS 0.52 42.0 3.95e-01 92.8% 80.0%
3698699 5090.1.1.7 beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › HAP2-GCS1 0.52 39.0 2.58e-01 87.0% 48.4%
3357798 3082.1.1.3 extended segments › C-terminal region of nonsense mediated decay factor UPF2 › C-terminal region of nonsense mediated decay factor UPF2 › C-terminal region of nonsense mediated decay factor UPF2 › Pro_isomerase 0.52 30.0 3.50e-01 75.4% 88.6%
5061290 2487.1.1.0 a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" 0.51 44.0 3.32e-01 100.0% 92.0%
4998579 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.50 44.0 3.21e-01 98.6% 48.2%
3848227 223.2.1.15 a+b three layers › Profilin-like › profilin-like › profilin-like › Longin 0.50 43.0 3.44e-01 100.0% 64.7%
3211117 304.112.1.0 a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.50 45.0 3.80e-01 100.0% 89.6%