Back to structures

OR180314.1__WNT46721.1__X__00061

Bact-Vir

OR180314.1__WNT46721.1__X__00061

Identity

Accession:
OR180314 ↗
Kingdom:
phage

Quality

78.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-130
PDB
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3bwgB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 43.0 5.49e-01 87.7% 100.0%
2hs5A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 39.0 5.11e-01 84.4% 94.0%
1hw1A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 42.0 5.17e-01 86.9% 90.7%
3s2wG00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 45.0 4.40e-01 70.5% 56.4%
4p9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 39.0 5.04e-01 84.4% 94.0%
4yifF00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 43.0 4.28e-01 71.3% 56.2%
3ecoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 45.0 4.41e-01 70.5% 58.9%
2qwwC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 43.0 4.19e-01 70.5% 53.6%
2a61B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 46.0 4.43e-01 72.1% 57.7%
3cdhA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 43.0 4.23e-01 71.3% 55.2%
2fa5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 43.0 4.09e-01 71.3% 51.8%
5eriA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 45.0 4.19e-01 71.3% 52.9%
2ethA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 47.0 4.49e-01 73.0% 60.3%
3by6C01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 39.0 4.78e-01 85.2% 88.3%
3broD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 45.0 4.42e-01 72.1% 61.2%
2v7fA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 46.0 4.40e-01 73.0% 79.1%
5c17A00 3.30.450.410 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.58 52.0 4.38e-01 99.2% 80.1%
2mtfA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 40.0 4.14e-01 73.8% 79.8%
2cw7A02 1.10.10.1010 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Intein homing endonuclease, domain IV 0.51 35.0 3.32e-01 92.6% 58.9%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4944172 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.79 46.0 5.84e-01 95.1% 100.0%
3589586 101.1.2.266 alpha arrays › HTH › HTH › winged helix domain › Phage_rep_org_N 0.78 59.0 5.91e-01 78.7% 83.2%
5014739 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 50.0 5.87e-01 79.5% 92.9%
3970023 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 44.0 5.41e-01 73.0% 88.7%
4949793 101.1.2.652 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C 0.76 45.0 4.39e-01 70.5% 54.6%
4598188 101.1.2.242 alpha arrays › HTH › HTH › winged helix domain › RepL 0.74 57.0 5.75e-01 98.4% 80.8%
4927610 101.1.2.110 alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.73 51.0 5.22e-01 72.1% 87.5%
3730487 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 50.0 4.71e-01 70.5% 81.4%
5065138 101.1.2.222 alpha arrays › HTH › HTH › winged helix domain › PH0730-like_N 0.72 50.0 5.48e-01 71.3% 88.0%
3970097 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 41.0 5.26e-01 87.7% 98.6%
326087 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.71 44.0 4.17e-01 71.3% 52.4%
5077293 101.1.2.210 alpha arrays › HTH › HTH › winged helix domain › CggR_N 0.71 49.0 5.25e-01 70.5% 81.9%
5010519 101.1.2.210 alpha arrays › HTH › HTH › winged helix domain › CggR_N 0.71 49.0 5.50e-01 71.3% 92.6%
3741636 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 42.0 4.79e-01 90.2% 81.7%
4426275 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 46.0 4.45e-01 74.6% 95.0%
5001480 101.1.2.652 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C 0.64 46.0 4.37e-01 73.0% 99.3%
3259230 101.1.2.88 alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.63 44.0 4.85e-01 76.2% 88.0%
5044704 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 54.0 4.34e-01 95.9% 100.0%
3949310 101.1.2.87 alpha arrays › HTH › HTH › winged helix domain › PaaX 0.62 45.0 4.58e-01 77.9% 76.7%
3519820 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.62 43.0 2.67e-01 70.5% 58.4%
5078625 101.1.2.21 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress 0.61 45.0 4.25e-01 76.2% 97.9%
4618641 183.1.1.0 alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain 0.58 45.0 4.30e-01 82.8% 98.6%
4011979 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 49.0 4.86e-01 88.5% 92.8%
5065238 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 36.0 3.79e-01 70.5% 78.1%
D2 high residues 194-257
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1dj8A00 1.10.890.10 Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › HNS-dependent expression A 0.69 52.0 4.92e-01 96.9% 67.1%
2ktmA00 1.10.790.10 Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Prion/Doppel protein, beta-ribbon domain 0.66 45.0 4.44e-01 71.9% 69.1%
3lynB00 1.20.150.10 Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein 0.65 55.0 4.55e-01 100.0% 68.5%
2gfhA02 1.20.120.710 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain 0.64 44.0 4.02e-01 71.9% 98.8%
3ufeA02 1.20.58.1950 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 46.0 4.92e-01 98.4% 96.2%
3iu5A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.62 42.0 3.51e-01 70.3% 97.4%
6t4hA03 1.10.3060.10 Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA 0.61 49.0 3.74e-01 95.3% 93.0%
1tteA02 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.60 38.0 4.00e-01 92.2% 71.9%
2xuaA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.58 48.0 3.28e-01 96.9% 89.2%
4aqnA02 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.58 46.0 3.42e-01 93.8% 72.5%
3a06B03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.57 49.0 4.46e-01 100.0% 71.6%
1u84A00 1.10.340.20 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain 0.56 40.0 3.75e-01 95.3% 59.3%
8d3mA02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.56 49.0 3.35e-01 100.0% 42.5%
5dicA00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.56 41.0 3.44e-01 100.0% 43.5%
1wkbA03 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.54 41.0 3.45e-01 87.5% 61.2%
2erbA01 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.53 36.0 3.18e-01 100.0% 43.0%
7ep1B01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.53 36.0 2.49e-01 73.4% 18.6%
3tjmA02 1.10.1470.20 Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › Fatty acid synthase; domain 2 0.53 38.0 3.41e-01 98.4% 54.4%
2zopA00 1.10.520.30 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain 0.53 46.0 3.78e-01 95.3% 65.2%
2e1qC10 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.52 44.0 3.63e-01 100.0% 67.2%
3umbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.52 44.0 4.16e-01 100.0% 78.5%
2xzmV01 1.10.60.20 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 0.51 40.0 4.09e-01 84.4% 98.4%
6tmfT00 1.10.60.20 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 0.51 42.0 4.22e-01 90.6% 95.3%
3t46A00 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.51 45.0 4.30e-01 98.4% 88.0%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5055976 4126.1.1.1 a/b three-layered sandwiches › beta-carbonic anhydrase-like › beta-carbonic anhydrase › beta-carbonic anhydrase › Pro_CA 0.75 56.0 3.93e-01 79.7% 62.0%
4610257 6130.1.1.0 alpha complex topology › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain 0.70 56.0 5.61e-01 100.0% 87.7%
5049807 4009.1.1.0 alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.69 52.0 5.24e-01 93.8% 78.5%
4994698 4041.1.1.0 a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase 0.67 56.0 3.93e-01 90.6% 55.9%
3690556 148.1.1.0 alpha arrays › Histone-like › Histone-related › Histone 0.65 44.0 4.57e-01 71.9% 80.0%
3512862 593.1.1.1 alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like › Cpn60_TCP1 0.65 44.0 3.05e-01 71.9% 43.0%
3973355 142.1.1.3 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.64 54.0 4.89e-01 100.0% 69.4%
3937465 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.64 57.0 3.93e-01 100.0% 31.2%
3524685 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.63 52.0 3.95e-01 100.0% 38.1%
3771372 3860.1.1.0 alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm 0.63 52.0 3.71e-01 100.0% 30.3%
3262801 3788.1.1.0 alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) 0.63 53.0 4.38e-01 98.4% 76.0%
3605910 3788.1.1.0 alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) 0.63 53.0 4.33e-01 100.0% 50.8%
3518379 3502.1.1.1 alpha bundles › uncharacterized conserved protein › uncharacterized conserved protein › uncharacterized conserved protein › YebG 0.61 40.0 4.27e-01 73.4% 78.2%
3998578 142.1.1.41 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › RabGAP-TBC 0.61 49.0 4.94e-01 100.0% 90.8%
4111513 7579.1.1.6 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 0.61 54.0 3.57e-01 100.0% 86.2%
3839309 5067.1.1.1 alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › ACR_tran 0.61 52.0 3.66e-01 100.0% 31.8%
143247 592.2.1.1 alpha arrays › PWI domain-like › YugE-like › YugE-like › DUF1871 0.60 40.0 3.71e-01 89.1% 53.7%
4144086 166.1.1.1 alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C 0.59 48.0 4.20e-01 98.4% 59.0%
3595457 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.58 51.0 4.59e-01 100.0% 90.0%
3838743 4126.1.1.1 a/b three-layered sandwiches › beta-carbonic anhydrase-like › beta-carbonic anhydrase › beta-carbonic anhydrase › Pro_CA 0.57 47.0 3.33e-01 95.3% 61.8%
3323926 142.1.1.0 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.55 48.0 4.19e-01 100.0% 82.0%
4027595 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.54 46.0 3.30e-01 100.0% 71.0%
3856788 110.1.1.1 alpha arrays › DEATH domain › DEATH domain › DEATH domain › Death 0.54 39.0 3.46e-01 79.7% 94.0%
3711680 191.1.1.0 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.54 46.0 3.87e-01 98.4% 97.4%
4529629 109.4.1.549 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SAPS 0.53 37.0 2.38e-01 73.4% 15.8%
4944401 150.1.1.1 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Ferritin 0.53 36.0 2.79e-01 71.9% 54.8%
5044955 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.53 46.0 3.56e-01 98.4% 95.9%
3475116 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.52 44.0 3.53e-01 95.3% 73.1%
3652408 192.7.1.0 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.51 37.0 3.32e-01 78.1% 54.7%
170038 132.2.1.1 alpha bundles › ACP-like › Colicin E immunity proteins › Colicin E immunity proteins › Colicin_Pyocin 0.51 44.0 3.96e-01 100.0% 92.5%
3262947 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.51 46.0 3.56e-01 98.4% 51.9%
3647374 164.1.1.20 alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › PF28607 0.51 35.0 3.21e-01 70.3% 75.3%
5078986 103.4.1.0 alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein 0.51 38.0 3.46e-01 96.9% 60.0%