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OR188719.1__WNO25026.1__NKJIMNAM_00045__00045

Bact-Vir

OR188719.1__WNO25026.1__NKJIMNAM_00045__00045

Identity

Accession:
OR188719 ↗
Kingdom:
phage

Quality

84.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pseudomonas_phage_LPPA36

TaxID: 3075042

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-84
PDB
Domain cluster: rep: KR072689.1__AKG94557.1__Shpa_46__00046__D3-71
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.68 39.0 4.78e-01 77.8% 95.8%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 42.0 4.60e-01 72.8% 86.4%
5is8A02 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.62 55.0 4.09e-01 96.3% 90.5%
2h36X00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 42.0 3.85e-01 84.0% 55.6%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 38.0 4.20e-01 75.3% 85.7%
2k4vA00 3.30.160.370 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 0.58 41.0 3.54e-01 75.3% 47.2%
4ge6A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.57 50.0 3.35e-01 96.3% 38.3%
1wchA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.56 51.0 3.41e-01 100.0% 38.0%
3d9wA02 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.56 49.0 4.55e-01 97.5% 89.2%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 36.0 3.85e-01 77.8% 81.5%
1a7tA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.55 45.0 3.32e-01 91.4% 62.1%
4gj4D00 3.30.450.260 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem NO binding associated domain 0.55 42.0 3.83e-01 85.2% 82.9%
2bzlA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.55 48.0 3.27e-01 96.3% 39.4%
1jmxA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.55 47.0 4.29e-01 97.5% 89.9%
3riqA00 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.54 40.0 2.44e-01 77.8% 13.1%
4qunA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.54 48.0 3.31e-01 100.0% 41.0%
3blcA00 2.70.98.90 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.54 45.0 3.25e-01 100.0% 86.1%
3vhxF00 2.60.40.4330 Mainly Beta › Sandwich › Immunoglobulin-like › Kinesin-like protein Kif23, Arf6-interacting domain 0.53 41.0 3.88e-01 100.0% 67.6%
4gn2A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.53 45.0 3.34e-01 100.0% 97.1%
2i0rA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 36.0 2.44e-01 85.2% 16.9%
3pg4A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.53 42.0 3.07e-01 87.7% 63.5%
2kr7A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.52 31.0 3.50e-01 86.4% 82.5%
4xrtA02 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 45.0 3.68e-01 100.0% 50.6%
4lduA02 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.52 35.0 3.23e-01 88.9% 52.8%
7c5wA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 39.0 3.29e-01 82.7% 96.6%
5tgnA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 40.0 3.69e-01 85.2% 98.2%
2d42A02 3.10.450.380 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 37.0 4.03e-01 100.0% 96.9%
3doaA01 2.30.310.10 Mainly Beta › Roll › ibrinogen binding protein from staphylococcus aureus fold › ibrinogen binding protein from staphylococcus aureus domain 0.52 43.0 3.60e-01 96.3% 69.9%
3f14A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 40.0 3.64e-01 85.2% 97.3%
2petA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 42.0 3.73e-01 97.5% 62.1%
2veoA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 44.0 2.99e-01 100.0% 62.9%
3lygA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 41.0 3.70e-01 91.4% 79.2%
1vw3B01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 28.0 2.76e-01 93.8% 43.0%
4n4bA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 38.0 2.62e-01 85.2% 21.0%
2b4wA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 39.0 2.68e-01 84.0% 25.8%
3hx8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 38.0 3.37e-01 84.0% 88.3%
2ia1A01 3.30.500.20 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › BH3703-like domains 0.50 37.0 3.31e-01 96.3% 53.8%
3ecfA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 40.0 3.52e-01 90.1% 74.2%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3637283 5.1.4.441 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Clathrin-link 0.62 45.0 2.87e-01 75.3% 54.9%
4464658 274.1.1.59 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › ComGG 0.58 48.0 4.27e-01 88.9% 70.2%
3584918 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.57 50.0 3.40e-01 96.3% 41.1%
3993689 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.56 40.0 4.20e-01 76.5% 96.0%
4503569 5.1.7.5 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 10-bladed › BNR, Sortilin-Vps10 0.56 40.0 2.43e-01 75.3% 69.2%
3509161 2007.2.3.21 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase, PTP-SAK 0.56 49.0 3.34e-01 96.3% 39.3%
3788120 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 38.0 2.58e-01 85.2% 17.4%
4522761 3308.1.1.0 ↗ beta duplicates or obligate multimers › periplasmic lysozyme inhibitor of I-type lysozyme-like › periplasmic lysozyme inhibitor of I-type lysozyme › periplasmic lysozyme inhibitor of I-type lysozyme 0.55 41.0 3.72e-01 79.0% 78.2%
5043504 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 32.0 3.83e-01 81.5% 96.0%
4354151 7503.1.1.3 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › TolB_N 0.54 45.0 4.20e-01 96.3% 79.0%
3889557 378.1.1.1 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › Endonuclease_NS 0.54 43.0 3.29e-01 90.1% 90.9%
3813686 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 36.0 2.56e-01 70.4% 90.2%
3709987 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.54 39.0 3.41e-01 77.8% 56.9%
3407647 4.1.1.326 ↗ beta barrels › SH3 › SH3 › SH3 › Chitin_bind_4 0.53 34.0 3.63e-01 74.1% 76.5%
3685544 5.1.5.77 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, Beta-prop_WDR75_1st 0.53 39.0 2.60e-01 77.8% 44.7%
4423084 3504.3.1.1 ↗ beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N 0.53 47.0 3.74e-01 100.0% 70.0%
3237464 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.53 48.0 3.19e-01 100.0% 37.5%
3615124 5.1.3.28 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 0.53 44.0 2.85e-01 92.6% 27.5%
3763123 5.1.4.371 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Frtz 0.53 39.0 2.55e-01 85.2% 15.7%
3373579 5.1.4.304 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR11_2nd 0.52 38.0 2.51e-01 80.2% 26.3%
3659202 1.1.11.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain 0.52 34.0 3.51e-01 90.1% 68.8%
4651524 7503.1.1.3 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › TolB_N 0.52 44.0 4.04e-01 100.0% 73.0%
3912640 391.1.2.1 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC 0.52 34.0 3.50e-01 86.4% 70.5%
3851160 5.1.5.61 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Frtz 0.52 41.0 2.56e-01 91.4% 18.4%
4193792 7503.1.1.3 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › TolB_N 0.51 44.0 4.01e-01 100.0% 73.9%
3275111 5.1.4.304 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR11_2nd 0.51 37.0 2.48e-01 77.8% 25.6%
4998373 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 30.0 3.48e-01 74.1% 92.0%
3607171 5.1.4.277 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_EIPR1 0.51 41.0 2.73e-01 90.1% 28.9%
3391727 5.1.4.156 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Ge1_WD40 0.51 42.0 2.58e-01 91.4% 22.7%
3241917 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.51 44.0 3.06e-01 100.0% 34.9%
3324058 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.50 40.0 2.71e-01 92.6% 26.9%
3717097 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.50 41.0 2.53e-01 90.1% 22.5%
D2 high residues 339-428
PDB
Domain cluster: rep: MK733264.1__QCW23589.1__X__00020__D343-420
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8oqkA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.66 39.0 3.75e-01 88.9% 51.5%
1ng6A02 1.10.10.410 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.62 38.0 4.48e-01 93.3% 98.2%
4neoA00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.59 42.0 4.34e-01 78.9% 78.3%
1u84A00 1.10.340.20 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain 0.59 43.0 4.49e-01 88.9% 84.0%
2cg5B00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.56 38.0 4.21e-01 72.2% 85.9%
6vhyA02 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.56 37.0 4.12e-01 77.8% 88.2%
4v19K02 1.10.10.250 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L11/L12, C-terminal domain 0.54 39.0 4.24e-01 75.6% 92.0%
6s10A01 1.10.1710.10 Mainly Alpha › Orthogonal Bundle › Fertility Inhibition Protein O; Chain: A; Domain 1 › ProQ/FinO domain 0.54 38.0 3.72e-01 90.0% 66.7%
2n1rA00 1.10.150.90 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Immunodeficiency lentiviruses, gag gene matrix protein p17 0.52 35.0 3.15e-01 74.4% 47.0%
3ri6A01 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.52 36.0 2.74e-01 72.2% 78.4%
2lkoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 37.0 3.30e-01 76.7% 52.9%
1h99A01 1.10.1790.10 Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain 0.51 39.0 3.72e-01 82.2% 94.2%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4033826 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.92 87.0 8.57e-01 100.0% 95.8%
4014593 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.84 51.0 6.40e-01 92.2% 100.0%
3814136 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.83 50.0 6.30e-01 91.1% 100.0%
3190880 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.82 52.0 6.27e-01 92.2% 96.7%
3198979 101.43.1.0 ↗ alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain 0.79 52.0 6.19e-01 98.9% 100.0%
3422646 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.79 51.0 6.17e-01 95.6% 100.0%
3487537 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.74 41.0 5.40e-01 83.3% 100.0%
3884711 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.70 41.0 4.78e-01 90.0% 81.5%
3255630 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 41.0 4.93e-01 88.9% 88.3%
4129575 101.1.1.187 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_33 0.69 46.0 5.30e-01 87.8% 93.8%
3589265 101.1.2.145 ↗ alpha arrays › HTH › HTH › winged helix domain › HHH_4 0.67 48.0 4.86e-01 95.6% 75.6%
3467577 101.1.1.121 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.66 49.0 4.45e-01 91.1% 58.3%
5047162 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.66 40.0 4.61e-01 86.7% 84.6%
4968187 101.1.2.619 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_33 0.65 44.0 5.02e-01 84.4% 95.4%
3681911 101.1.1.121 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.63 48.0 5.02e-01 98.9% 90.0%
3999776 610.3.1.0 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain 0.63 45.0 4.13e-01 94.4% 55.2%
4064960 610.3.1.1 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.61 43.0 3.44e-01 91.1% 36.1%
4520559 592.2.1.1 ↗ alpha arrays › PWI domain-like › YugE-like › YugE-like › DUF1871 0.60 43.0 4.44e-01 88.9% 80.0%
3432362 101.1.1.121 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.60 50.0 4.46e-01 90.0% 99.2%
3740014 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.60 44.0 4.90e-01 97.8% 98.6%
143247 592.2.1.1 ↗ alpha arrays › PWI domain-like › YugE-like › YugE-like › DUF1871 0.59 42.0 4.41e-01 88.9% 82.9%
3702140 2003.1.2.27 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › SE 0.58 40.0 2.63e-01 72.2% 48.7%
3253867 101.1.2.68 ↗ alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 0.58 49.0 4.29e-01 92.2% 68.9%
3880644 101.1.1.53 ↗ alpha arrays › HTH › HTH › Three-helical HTH › BEN 0.58 46.0 4.57e-01 93.3% 82.1%
3714843 592.6.1.0 ↗ alpha arrays › PWI domain-like › Pre-mRNA-splicing helicase BRR2 plug domain › Pre-mRNA-splicing helicase BRR2 plug domain 0.57 43.0 4.18e-01 87.8% 73.0%
3417440 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.56 52.0 4.49e-01 100.0% 84.4%
3311830 708.1.1.7 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › DBD_Tnp_Mut 0.56 49.0 4.24e-01 93.3% 83.0%
3188707 132.1.1.6 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › DUF7080 0.55 39.0 3.84e-01 80.0% 68.0%
3216945 101.1.1.102 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Lin-8 0.55 46.0 4.16e-01 93.3% 84.6%
4331817 610.3.1.1 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.54 46.0 3.70e-01 94.4% 52.8%
3960575 610.4.1.0 ↗ alpha arrays › ERP29 C domain-like › YqeY domain › YqeY domain 0.54 38.0 3.31e-01 93.3% 44.7%
4970554 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.54 35.0 2.68e-01 94.4% 27.3%
3498904 207.4.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like › TBCC 0.54 47.0 3.32e-01 100.0% 54.4%
4595413 610.3.1.1 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.53 44.0 3.60e-01 94.4% 52.2%
3588856 162.1.1.1 ↗ alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PRD 0.52 39.0 3.73e-01 78.9% 93.3%
4440408 610.3.1.1 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.52 44.0 3.53e-01 94.4% 52.4%
4148076 610.3.1.1 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.52 44.0 3.55e-01 93.3% 52.6%
3568587 610.3.1.1 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.52 43.0 3.51e-01 93.3% 52.2%
4937450 610.3.1.1 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.52 43.0 3.44e-01 94.4% 53.8%
4946990 610.3.1.1 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.51 44.0 3.61e-01 97.8% 52.0%
4057733 610.3.1.1 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.51 43.0 3.30e-01 94.4% 49.5%
4396894 610.3.1.1 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.51 44.0 3.57e-01 97.8% 52.8%
3588553 162.1.1.1 ↗ alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PRD 0.51 39.0 3.55e-01 83.3% 80.0%
4339612 131.1.1.3 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.51 46.0 3.53e-01 100.0% 69.0%
3604336 610.3.1.1 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.51 42.0 3.38e-01 93.3% 51.4%
5069751 7573.1.1.1 ↗ a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran 0.51 43.0 3.34e-01 92.2% 99.0%
3254586 610.3.1.1 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.50 42.0 3.40e-01 97.8% 49.7%
D3 high residues 651-726
PDB
Domain cluster: rep: MG271909.1__ATS93224.1__SLBS1_A52__00052__D661-730
CATH (61)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2fbhA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 58.0 4.80e-01 100.0% 48.9%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 56.0 5.17e-01 100.0% 66.0%
6kf9G01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 57.0 5.56e-01 98.7% 81.7%
2nyxB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 56.0 4.60e-01 100.0% 47.2%
1z7uB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 55.0 4.92e-01 100.0% 60.0%
1fpqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 61.0 5.16e-01 100.0% 62.0%
2dqlA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 60.0 5.27e-01 100.0% 65.2%
5f7qC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 54.0 5.55e-01 94.7% 94.3%
6qpqB00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.67 58.0 5.73e-01 100.0% 95.1%
5dymA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 57.0 5.30e-01 100.0% 77.1%
6abqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 56.0 5.11e-01 100.0% 70.8%
5nl9A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 51.0 4.95e-01 93.4% 77.4%
2mbfA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 56.0 5.28e-01 100.0% 89.7%
5h20A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 54.0 4.96e-01 100.0% 69.9%
2do7A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 52.0 5.13e-01 100.0% 85.0%
3keyA01 1.10.10.1080 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain 0.64 55.0 5.26e-01 94.7% 97.7%
1vtnC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 56.0 5.12e-01 100.0% 75.5%
3c18A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 45.0 5.02e-01 82.9% 100.0%
1o57A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 51.0 5.21e-01 98.7% 94.4%
1i27A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 50.0 5.18e-01 100.0% 89.0%
3cuqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 55.0 5.41e-01 100.0% 91.4%
7jgsG02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 55.0 5.12e-01 100.0% 81.6%
2wa0A01 1.10.10.1200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MAGE homology domain, winged helix WH1 motif 0.63 56.0 5.09e-01 100.0% 75.2%
4esjA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 51.0 4.87e-01 96.1% 77.8%
2a07J00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 50.0 4.96e-01 100.0% 88.0%
2k4jA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 51.0 4.65e-01 100.0% 69.5%
3e1sA01 1.10.10.2220 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.60 50.0 4.71e-01 94.7% 76.8%
1bm9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 52.0 4.55e-01 100.0% 63.3%
4lecA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.59 47.0 3.47e-01 100.0% 33.2%
6s9vB01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.58 45.0 2.97e-01 85.5% 38.1%
2eshA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 50.0 4.43e-01 100.0% 68.4%
1kzfA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.58 47.0 3.55e-01 92.1% 81.8%
6n9gA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 49.0 4.55e-01 100.0% 91.0%
4pcqA02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.56 38.0 3.73e-01 82.9% 63.1%
2ph7A01 1.10.3400.10 Mainly Alpha › Orthogonal Bundle › af_2093 domain like fold › af_2093 domain like 0.56 48.0 4.12e-01 97.4% 61.3%
3hluA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 35.0 3.55e-01 81.6% 64.4%
2b25A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 44.0 3.35e-01 96.1% 36.3%
2cy2A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 45.0 3.53e-01 92.1% 95.4%
3blnA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 46.0 3.82e-01 96.1% 96.5%
1yk3B00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 44.0 3.36e-01 90.8% 85.5%
2zihC00 1.10.3630.10 Mainly Alpha › Orthogonal Bundle › yeast vps74-n-term truncation variant fold › yeast vps74-n-term truncation variant domain like 0.54 46.0 3.24e-01 98.7% 54.1%
4z7eA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.54 43.0 3.44e-01 89.5% 45.2%
3evzA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 45.0 3.50e-01 97.4% 42.2%
4lhfA00 6.10.200.10 Special › Helix non-globular › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › Regulatory phage protein Cox 0.54 37.0 3.75e-01 82.9% 70.9%
1m0sA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.54 34.0 3.47e-01 81.6% 66.7%
2l2oA00 1.10.10.1540 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Costar domain 0.53 46.0 4.53e-01 100.0% 94.1%
3pqvC01 3.65.10.20 Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › RNA 3'-terminal phosphate cyclase domain 0.53 45.0 3.22e-01 100.0% 95.7%
1tizA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.53 38.0 4.05e-01 96.1% 89.6%
3o66B01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.52 40.0 3.27e-01 89.5% 42.9%
2gukA00 3.30.2190.10 Alpha Beta › 2-Layer Sandwich › PG1857-like › PG1857-like 0.52 41.0 3.61e-01 96.1% 58.6%
1rq5A02 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.52 41.0 2.54e-01 89.5% 24.6%
3s1tA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.51 37.0 3.68e-01 81.6% 72.5%
3mr7A00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.51 44.0 3.44e-01 98.7% 62.4%
2crqA01 3.30.110.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Translation initiation factor 3 (IF-3), C-terminal domain 0.51 43.0 4.16e-01 96.1% 88.4%
4bs9A03 3.30.1330.230 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › 0.51 38.0 3.16e-01 81.6% 55.9%
1j4wA01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.51 35.0 3.61e-01 81.6% 74.3%
2q7eA02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.51 42.0 3.18e-01 97.4% 87.7%
3ialA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.51 43.0 3.01e-01 98.7% 77.9%
2cteA01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.50 33.0 3.30e-01 80.3% 64.6%
7qssA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.50 40.0 3.06e-01 100.0% 35.6%
3i3nA02 1.25.40.420 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.50 41.0 3.74e-01 93.4% 74.5%
ECOD (89)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4984018 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.75 59.0 6.14e-01 100.0% 94.3%
3365938 101.1.2.37 ↗ alpha arrays › HTH › HTH › winged helix domain › E2F_TDP 0.74 64.0 6.09e-01 94.7% 82.2%
3287678 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.72 58.0 5.73e-01 96.1% 83.7%
3275982 101.1.2.312 ↗ alpha arrays › HTH › HTH › winged helix domain › MSC 0.72 63.0 4.64e-01 98.7% 37.6%
5023129 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.72 58.0 5.74e-01 100.0% 85.0%
3958859 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 59.0 5.86e-01 100.0% 88.7%
3516107 101.1.2.312 ↗ alpha arrays › HTH › HTH › winged helix domain › MSC 0.71 60.0 5.30e-01 96.1% 70.4%
3887336 101.1.4.12 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › MSC 0.70 62.0 4.47e-01 100.0% 37.3%
3205132 101.1.2.533 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_CYT4 0.70 61.0 5.64e-01 100.0% 75.8%
3542800 101.1.2.312 ↗ alpha arrays › HTH › HTH › winged helix domain › MSC 0.70 63.0 4.33e-01 100.0% 32.5%
3735293 101.1.2.312 ↗ alpha arrays › HTH › HTH › winged helix domain › MSC 0.70 61.0 4.26e-01 100.0% 34.6%
3504010 247.1.1.0 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase 0.70 62.0 4.11e-01 100.0% 24.6%
4310506 101.1.2.312 ↗ alpha arrays › HTH › HTH › winged helix domain › MSC 0.70 61.0 4.38e-01 98.7% 39.6%
3228509 101.1.4.12 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › MSC 0.70 61.0 5.13e-01 100.0% 59.3%
3656554 101.1.2.68 ↗ alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 0.70 55.0 4.64e-01 100.0% 49.6%
4934296 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 61.0 5.54e-01 100.0% 74.3%
3406884 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 59.0 4.15e-01 96.1% 30.4%
5016748 101.1.2.30 ↗ alpha arrays › HTH › HTH › winged helix domain › TrmB 0.69 55.0 4.79e-01 100.0% 55.8%
5061948 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.69 61.0 4.99e-01 100.0% 53.5%
3573598 101.1.2.154 ↗ alpha arrays › HTH › HTH › winged helix domain › CDT1_C 0.69 58.0 5.17e-01 100.0% 64.5%
3602589 101.1.2.150 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.69 55.0 5.06e-01 100.0% 67.0%
3782039 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 63.0 5.13e-01 100.0% 77.0%
5076562 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 57.0 5.25e-01 92.1% 81.0%
3784677 101.1.2.312 ↗ alpha arrays › HTH › HTH › winged helix domain › MSC 0.68 57.0 4.19e-01 96.1% 38.2%
4978533 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.68 59.0 4.99e-01 100.0% 59.3%
3642660 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.68 60.0 4.79e-01 100.0% 52.9%
3167163 101.1.2.65 ↗ alpha arrays › HTH › HTH › winged helix domain › Rad21_Rec8 0.68 60.0 5.58e-01 100.0% 81.1%
3167236 148.1.3.31 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › MCM4_WHD 0.68 55.0 5.30e-01 96.1% 78.8%
3784212 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 60.0 5.40e-01 100.0% 76.2%
5035685 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.68 60.0 5.14e-01 100.0% 62.9%
5004287 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 50.0 5.39e-01 94.7% 100.0%
5033290 101.1.2.30 ↗ alpha arrays › HTH › HTH › winged helix domain › TrmB 0.68 53.0 4.67e-01 100.0% 55.8%
4948099 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 59.0 5.28e-01 100.0% 77.3%
3497894 101.1.2.374 ↗ alpha arrays › HTH › HTH › winged helix domain › MCM4_WHD 0.68 52.0 5.12e-01 96.1% 77.1%
3897679 148.1.3.361 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › WH_MCM3_C 0.67 50.0 5.35e-01 93.4% 93.8%
4948474 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 52.0 5.40e-01 96.1% 94.3%
4990676 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.67 59.0 5.24e-01 100.0% 76.4%
3269500 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 56.0 5.17e-01 97.4% 72.7%
4994432 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 55.0 5.03e-01 100.0% 67.6%
5065435 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 57.0 5.77e-01 94.7% 97.3%
3695839 101.1.2.160 ↗ alpha arrays › HTH › HTH › winged helix domain › BLACT_WH 0.67 58.0 5.89e-01 98.7% 98.6%
3484048 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 55.0 5.75e-01 96.1% 100.0%
3268092 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 58.0 5.05e-01 100.0% 65.0%
4027193 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 57.0 5.46e-01 98.7% 83.3%
3167816 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 58.0 5.53e-01 100.0% 86.7%
4978855 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.66 56.0 4.90e-01 100.0% 61.7%
3623882 101.1.2.75 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIF_alpha 0.66 53.0 5.50e-01 100.0% 95.7%
4976218 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.65 57.0 4.97e-01 100.0% 65.0%
3817137 101.1.2.57 ↗ alpha arrays › HTH › HTH › winged helix domain › EAP30 0.65 57.0 5.22e-01 97.4% 75.0%
4625648 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.65 58.0 5.15e-01 100.0% 69.7%
3610083 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 56.0 5.22e-01 100.0% 80.0%
3702324 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 56.0 5.20e-01 98.7% 94.0%
5065027 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.65 56.0 4.57e-01 100.0% 51.7%
5014176 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.64 56.0 4.46e-01 100.0% 47.5%
3956796 101.1.2.49 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR,Vir_act_alpha_C 0.64 55.0 4.21e-01 100.0% 40.5%
3781694 101.1.2.4 ↗ alpha arrays › HTH › HTH › winged helix domain › Forkhead 0.63 55.0 4.76e-01 100.0% 82.4%
3781188 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 53.0 5.09e-01 94.7% 92.2%
3385626 101.1.2.8 ↗ alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C 0.63 54.0 4.90e-01 98.7% 70.2%
5010374 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 54.0 5.11e-01 100.0% 80.0%
3670673 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.62 55.0 4.86e-01 100.0% 68.2%
3609468 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 52.0 5.07e-01 100.0% 84.7%
3550228 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 55.0 4.75e-01 100.0% 62.5%
4947503 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 55.0 4.34e-01 100.0% 48.1%
3278646 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.62 48.0 3.80e-01 96.1% 40.6%
3907766 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 54.0 4.79e-01 100.0% 68.2%
3258350 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 54.0 4.70e-01 100.0% 77.5%
4976186 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.61 53.0 4.29e-01 100.0% 49.0%
3963083 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 53.0 4.47e-01 100.0% 57.0%
4963760 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 53.0 4.97e-01 100.0% 80.0%
4943782 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 52.0 4.57e-01 100.0% 62.5%
3560804 101.1.2.10 ↗ alpha arrays › HTH › HTH › winged helix domain › Linker_histone 0.61 51.0 5.01e-01 100.0% 87.1%
3187043 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 52.0 4.98e-01 100.0% 90.0%
3957963 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.59 48.0 4.50e-01 93.4% 72.6%
3679905 320.1.1.1 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.59 49.0 4.35e-01 100.0% 61.7%
3271616 101.1.2.147 ↗ alpha arrays › HTH › HTH › winged helix domain › ORC4_C 0.59 50.0 4.36e-01 100.0% 69.6%
4940432 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 50.0 4.78e-01 100.0% 86.7%
5052672 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.57 39.0 4.05e-01 81.6% 77.1%
3407104 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 48.0 4.67e-01 100.0% 88.2%
3698196 320.1.1.1 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.56 45.0 4.32e-01 98.7% 74.4%
3729360 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 47.0 4.48e-01 96.1% 100.0%
3807768 2003.1.5.115 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_29 0.56 45.0 3.08e-01 96.1% 24.7%
3980386 7523.1.1.17 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › OpuAC 0.56 43.0 3.43e-01 88.2% 44.8%
3290168 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.54 43.0 3.50e-01 90.8% 97.5%
3970853 7523.1.1.0 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.54 42.0 3.35e-01 89.5% 44.0%
4033445 7523.1.1.17 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › OpuAC 0.53 43.0 3.24e-01 89.5% 37.1%
3602264 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.53 41.0 4.04e-01 100.0% 80.0%
3602142 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.52 45.0 4.12e-01 100.0% 76.2%
4963469 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.51 44.0 4.05e-01 100.0% 79.0%
4934172 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.50 40.0 4.10e-01 96.1% 98.6%
D4 medium residues 125-189
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5w36B01 3.90.980.10 Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain 0.71 63.0 4.99e-01 100.0% 87.3%
4k7cA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.64 50.0 3.11e-01 86.2% 83.0%
2bhoA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.62 49.0 4.11e-01 86.2% 99.1%
4ok4A02 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.61 46.0 2.94e-01 84.6% 64.3%
7dpyB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.61 41.0 3.82e-01 70.8% 61.4%
2arhA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.60 47.0 3.58e-01 86.2% 67.1%
3r6fA00 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.57 43.0 3.56e-01 84.6% 75.4%
3g8wB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 47.0 3.67e-01 98.5% 95.7%
6iq1A00 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.56 42.0 3.37e-01 84.6% 76.2%
3l7xA00 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.56 42.0 3.32e-01 86.2% 71.3%
1dfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 43.0 3.29e-01 89.2% 64.7%
4n81A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.55 42.0 3.44e-01 86.2% 82.4%
1av5A00 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.55 41.0 3.58e-01 84.6% 93.8%
2mk5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 45.0 3.58e-01 89.2% 74.8%
3mgdB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 45.0 3.55e-01 95.4% 88.8%
2oikA00 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.54 41.0 3.35e-01 86.2% 70.5%
4zglD00 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.54 41.0 3.66e-01 86.2% 95.1%
8aimG01 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.54 41.0 3.81e-01 81.5% 91.4%
2eo4A00 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.54 40.0 3.19e-01 84.6% 65.1%
7e52A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 44.0 3.54e-01 92.3% 93.0%
7uclA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 42.0 3.83e-01 100.0% 98.0%
2p4oA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.52 45.0 2.98e-01 100.0% 72.9%
2g1lA00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.52 44.0 3.84e-01 96.9% 83.5%
5mu3B00 3.40.50.12050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 41.0 3.13e-01 98.5% 35.6%
4h0aA00 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.51 44.0 2.93e-01 100.0% 41.8%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.51 41.0 3.87e-01 87.7% 80.0%
2jmuA01 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.51 44.0 3.11e-01 100.0% 79.3%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3511263 4023.1.1.0 ↗ a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core 0.85 76.0 6.56e-01 100.0% 65.3%
4995760 4023.1.1.0 ↗ a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core 0.75 66.0 6.30e-01 96.9% 100.0%
3297022 4023.1.1.0 ↗ a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core 0.68 60.0 5.74e-01 100.0% 93.3%
5072132 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.66 41.0 3.89e-01 70.8% 51.2%
3278065 4312.1.1.4 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 0.61 44.0 3.71e-01 81.5% 45.5%
4677581 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.60 41.0 2.67e-01 70.8% 34.4%
3258441 234.3.1.0 ↗ a+b two layers › Microbial ribonucleases-like › Colicin D nuclease domain › Colicin D nuclease domain 0.58 38.0 3.64e-01 72.3% 57.3%
4581502 391.1.2.3 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › SVWC 0.57 37.0 3.54e-01 81.5% 56.0%
3741855 12.1.1.35 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Melibiase_C 0.57 39.0 3.48e-01 70.8% 94.7%
3588517 216.1.1.28 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › Prok-E2_B 0.57 50.0 4.10e-01 100.0% 59.2%
4176825 312.1.1.2 ↗ a+b three layers › HIT-like › HIT-related › HIT-related › HIT 0.56 42.0 3.63e-01 84.6% 91.3%
3386883 312.1.1.2 ↗ a+b three layers › HIT-like › HIT-related › HIT-related › HIT 0.55 41.0 3.51e-01 84.6% 79.2%
3239518 4099.1.1.28 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › PF29108 0.55 44.0 4.16e-01 100.0% 73.8%
3967351 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.54 44.0 3.46e-01 98.5% 98.2%
3979409 312.1.1.2 ↗ a+b three layers › HIT-like › HIT-related › HIT-related › HIT 0.54 40.0 3.38e-01 84.6% 96.2%
3392142 389.1.2.1 ↗ few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › Sushi 0.54 37.0 4.00e-01 100.0% 85.5%
149483 312.1.1.8 ↗ a+b three layers › HIT-like › HIT-related › HIT-related › DcpS_C 0.54 41.0 3.49e-01 86.2% 88.1%
3284788 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.54 41.0 3.94e-01 86.2% 72.5%
3300968 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 45.0 2.59e-01 100.0% 58.3%
3207081 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.54 36.0 3.65e-01 70.8% 92.3%
3409307 239.3.1.1 ↗ beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain › Fasciclin 0.53 45.0 3.40e-01 96.9% 65.5%
5060335 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.51 36.0 2.40e-01 76.9% 28.8%
3744672 298.1.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 0.51 41.0 3.15e-01 92.3% 82.4%
3499681 292.2.1.1 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.51 41.0 3.71e-01 93.8% 64.5%
3709162 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 42.0 2.73e-01 95.4% 33.6%
3177293 241.6.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Arp2/3 complex subunits › Arp2/3 complex subunits 0.50 44.0 3.57e-01 100.0% 79.2%
D5 medium residues 190-338
PDB
Domain cluster: rep: IMGVR_UViG_3300042256_000037-3300042256-Ga0451646_00357_7329_9968__D263-392
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13362.13 best Toprim_3 32.5 1.30e-07 73.2% 96.8%
D6 medium residues 431-480_602-648
PDB
Domain cluster: representative
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF05272.18 best VapE-like_dom 41.6 1.40e-10 52.6% 22.1%
PF05272.18 VapE-like_dom 33.1 5.50e-08 50.5% 20.7%
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2pusA04 6.10.140.300 Special › Helix non-globular › Helix Hairpins › 0.57 41.0 4.03e-01 96.9% 67.6%
1z21A00 1.10.10.1000 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Type III secretion system virulence factor YopR, core domain 0.52 30.0 3.06e-01 75.3% 55.2%
2kw6A00 6.10.140.1300 Special › Helix non-globular › Helix Hairpins › 0.52 31.0 3.67e-01 74.2% 89.2%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4033843 2004.1.1.313 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › VapE-like_dom 0.92 63.0 4.83e-01 70.1% 99.5%
3250971 616.1.1.0 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain 0.57 43.0 4.35e-01 81.4% 99.0%
4954779 5065.1.1.1 ↗ alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3 0.51 36.0 2.78e-01 77.3% 94.9%
D7 medium residues 481-601
PDB
Domain cluster: rep: highly_derived_D5-like_helicase-primase__YP_003406787__Marseillevirus_marseillevirus__694581__D555-677
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05272.18 best VapE-like_dom 167.3 5.00e-49 100.0% 55.8%