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OR188720.1__WNO25053.1__OKBPHCKP_00024__00024

Bact-Vir

OR188720.1__WNO25053.1__OKBPHCKP_00024__00024

Identity

Accession:
OR188720 ↗
Kingdom:
phage

Quality

86.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pseudomonas_phage_LPPA33

TaxID: 3075041

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 54-88
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6cmzA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.69 47.0 3.33e-01 74.3% 93.3%
1c0gA03 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.67 43.0 3.20e-01 94.3% 25.0%
7razA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 42.0 3.23e-01 97.1% 29.4%
3d6wB02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.59 43.0 4.23e-01 100.0% 74.4%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 40.0 3.54e-01 82.9% 41.4%
4ye4H01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 40.0 2.93e-01 77.1% 40.5%
1uirA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.58 40.0 2.47e-01 74.3% 79.1%
1f44A01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.56 40.0 2.63e-01 85.7% 35.6%
4hb9A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 42.0 2.47e-01 94.3% 58.1%
7lt2A01 3.30.460.90 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.55 41.0 2.58e-01 91.4% 53.9%
1vwxA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 40.0 3.32e-01 91.4% 81.2%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 42.0 3.96e-01 91.4% 87.2%
3pnnA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.55 44.0 2.68e-01 100.0% 26.9%
2rghA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 41.0 2.58e-01 97.1% 54.6%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 43.0 3.65e-01 100.0% 70.6%
5m1pB00 3.30.420.240 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.53 45.0 2.83e-01 100.0% 89.4%
3nbxX04 2.40.128.430 Mainly Beta › Beta Barrel › Lipocalin › 0.52 40.0 3.06e-01 100.0% 32.7%
6b4oA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 36.0 2.73e-01 88.6% 94.9%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 39.0 3.25e-01 91.4% 76.5%
1h0hA02 3.40.50.740 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 39.0 2.39e-01 91.4% 54.4%
3vpbE00 2.20.28.160 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.50 42.0 3.69e-01 100.0% 71.4%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4027119 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.68 49.0 3.31e-01 77.1% 34.1%
4959192 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.66 44.0 3.65e-01 97.1% 36.9%
5036616 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.66 44.0 3.54e-01 74.3% 34.3%
3238632 389.1.2.0 ↗ few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain 0.63 49.0 3.72e-01 91.4% 87.8%
3387739 4998.1.1.1 ↗ beta sandwiches › Flagellar hook protein flgE D2 domain-like › Flagellar hook protein flgE D2 domain › Flagellar hook protein flgE D2 domain › FlgE_D2 0.63 51.0 3.28e-01 100.0% 36.9%
4981036 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.62 42.0 3.95e-01 77.1% 55.6%
3026414 4056.1.1.4 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Head-tail_con 0.61 47.0 3.46e-01 100.0% 59.1%
3246081 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.61 43.0 3.93e-01 94.3% 52.0%
5024227 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 48.0 4.05e-01 94.3% 82.5%
4147366 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.60 40.0 3.67e-01 97.1% 45.8%
3540263 377.1.1.50 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › ZMYM4 0.60 40.0 3.80e-01 77.1% 55.6%
3591826 7569.1.1.0 ↗ a/b three-layered sandwiches › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like 0.59 39.0 2.40e-01 100.0% 11.2%
3601162 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 49.0 4.05e-01 100.0% 76.9%
3708055 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.57 47.0 3.98e-01 100.0% 76.9%
3907975 377.1.1.50 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › ZMYM4 0.57 39.0 3.70e-01 77.1% 57.8%
4977469 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.57 47.0 3.86e-01 100.0% 68.6%
4927653 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.56 47.0 3.93e-01 100.0% 72.3%
3408859 11.1.1.813 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › INTS4_C 0.56 38.0 2.78e-01 71.4% 33.6%
5038405 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 44.0 4.17e-01 94.3% 86.7%
4952854 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.56 47.0 3.91e-01 100.0% 69.2%
5067372 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.55 46.0 3.96e-01 100.0% 76.7%
5066141 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.55 45.0 3.82e-01 100.0% 72.3%
1263580 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.55 42.0 3.32e-01 85.7% 73.3%
4949848 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.55 44.0 3.93e-01 97.1% 78.2%
4147290 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.54 44.0 3.71e-01 100.0% 69.2%
3391006 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 41.0 2.51e-01 100.0% 36.0%
4157284 9.7.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Metalloprotease inhibitor › Metalloprotease inhibitor › Inh 0.53 41.0 3.15e-01 100.0% 35.2%
3821778 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 42.0 3.89e-01 97.1% 98.0%
3990001 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.53 37.0 3.40e-01 100.0% 52.8%
3684739 1.1.1.30 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › PF30863 0.53 41.0 3.02e-01 100.0% 76.7%
4288670 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.53 39.0 2.35e-01 94.3% 36.2%
3187470 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.53 38.0 2.41e-01 94.3% 37.9%
4780493 3293.1.1.1 ↗ beta barrels › LARA domain › LARA domain › LARA domain › LARA_dom 0.52 40.0 3.40e-01 100.0% 47.3%
3722079 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.52 38.0 2.27e-01 94.3% 52.6%
4928641 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.51 38.0 3.21e-01 91.4% 49.3%
3232445 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 43.0 3.69e-01 100.0% 63.3%
4591362 702.1.1.4 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack 0.50 34.0 2.36e-01 88.6% 40.0%