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OR204649.1__WMM35530.1__X__00039

Bact-Vir

OR204649.1__WMM35530.1__X__00039

Identity

Accession:
OR204649 ↗
Kingdom:
phage

Quality

91.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schitoviridae› Stoningtonvirus› Vibrio_phage_PJN101

TaxID: 3072195

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 2-89
PDB
Domain cluster: rep: MN047793.1__QDJ96385.1__Xoosp13_199__00199__D20-94
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4l8hB00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.74 58.0 5.12e-01 81.8% 64.2%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.70 51.0 4.42e-01 94.3% 48.6%
2lnjA00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.63 46.0 3.75e-01 83.0% 40.0%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.58 44.0 3.68e-01 80.7% 70.8%
3jv1A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.58 44.0 3.48e-01 80.7% 47.3%
1mveA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 43.0 3.17e-01 79.5% 37.6%
1f2uA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 38.0 3.20e-01 85.2% 40.3%
2k4vA00 3.30.160.370 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 0.56 44.0 3.95e-01 85.2% 63.2%
1epaA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 44.0 3.66e-01 85.2% 83.1%
2jmuA01 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.55 43.0 3.25e-01 83.0% 78.9%
4iedA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.55 43.0 3.16e-01 84.1% 81.8%
3p0cA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 35.0 3.28e-01 70.5% 79.3%
2cqaA01 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.51 37.0 4.02e-01 79.5% 91.9%
8aa0E01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 39.0 2.81e-01 86.4% 57.5%
4bs9A05 3.30.160.660 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.50 38.0 3.49e-01 79.5% 70.2%
2pimA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.50 34.0 3.07e-01 71.6% 77.3%
3tqmA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.50 39.0 3.88e-01 83.0% 85.6%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4991720 3692.1.1.0 ↗ a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain 0.72 46.0 4.06e-01 70.5% 45.6%
3599881 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.65 50.0 4.24e-01 84.1% 49.7%
4026643 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.65 42.0 4.32e-01 78.4% 68.2%
3235810 5087.3.1.2 ↗ beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › MTP_lip_bd 0.64 57.0 4.05e-01 100.0% 74.8%
4059480 881.1.1.37 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PF27270 0.64 48.0 3.83e-01 79.5% 40.0%
3968432 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.64 35.0 3.36e-01 79.5% 43.8%
150440 881.1.1.1 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.63 46.0 3.78e-01 83.0% 41.2%
3734952 4252.1.1.12 ↗ beta barrels › AttH-like › AttH-like › AttH-like › DUF7064 0.60 49.0 3.86e-01 87.5% 74.6%
3933073 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.60 53.0 4.08e-01 95.5% 54.7%
3171938 896.1.1.2 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP14 0.60 43.0 4.01e-01 76.1% 85.1%
3197622 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.60 50.0 4.73e-01 93.2% 97.1%
5022763 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 42.0 2.83e-01 73.9% 29.2%
3730749 77.3.1.0 ↗ beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain 0.59 46.0 4.32e-01 84.1% 88.2%
3933483 11.10.1.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.58 43.0 3.80e-01 79.5% 80.7%
3428522 331.3.1.43 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PDF2_C 0.58 43.0 3.13e-01 78.4% 28.7%
3718216 4051.1.1.0 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz 0.57 43.0 3.87e-01 80.7% 92.8%
3508100 241.15.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.57 45.0 3.86e-01 84.1% 61.4%
4963369 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.57 47.0 3.77e-01 88.6% 86.5%
3946213 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.56 44.0 3.71e-01 84.1% 67.3%
184719 3514.1.1.1 ↗ a+b two layers › uncharacterized protein PA1076 › uncharacterized protein PA1076 › uncharacterized protein PA1076 › DUF5064 0.56 44.0 3.95e-01 85.2% 63.2%
4927872 330.2.1.5 ↗ a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › PF29181 0.55 50.0 4.51e-01 100.0% 90.0%
3390537 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.55 46.0 3.13e-01 94.3% 39.4%
4040973 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.54 39.0 4.33e-01 78.4% 94.3%
4993562 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.54 41.0 3.96e-01 83.0% 70.5%
3253551 219.1.1.6 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Acetyltransf_2 0.54 38.0 2.74e-01 73.9% 90.5%
3969815 4210.1.1.5 ↗ a+b two layers › WGR domain › WGR domain › WGR domain › PA4575 0.54 41.0 3.98e-01 83.0% 74.0%
3526118 11.1.1.810 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › FGF-BP1 0.53 39.0 3.73e-01 78.4% 69.5%
3580087 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 45.0 2.91e-01 98.9% 47.1%
3436093 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.53 38.0 4.06e-01 78.4% 88.0%
3670829 5.1.3.144 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.53 43.0 3.04e-01 94.3% 63.6%
3655368 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.53 38.0 4.05e-01 78.4% 88.0%
3288884 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 38.0 3.61e-01 77.3% 84.8%
3817434 331.3.1.43 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PDF2_C 0.52 44.0 3.20e-01 96.6% 88.1%
3329783 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.52 40.0 3.99e-01 92.0% 78.9%
3258377 331.23.1.0 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.52 38.0 3.81e-01 77.3% 80.0%
4157358 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.51 40.0 4.21e-01 83.0% 97.4%
3791149 5.1.3.4 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › WD40 0.51 41.0 2.74e-01 86.4% 43.3%
3260045 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.51 38.0 4.02e-01 83.0% 92.0%
3938509 5.1.4.304 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR11_2nd 0.51 40.0 2.82e-01 88.6% 80.3%
3991341 5.1.4.304 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR11_2nd 0.51 40.0 2.46e-01 88.6% 40.2%
5024241 330.2.1.5 ↗ a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › PF29181 0.51 39.0 3.86e-01 83.0% 91.6%
3995515 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.50 39.0 2.70e-01 83.0% 27.9%
3962245 881.1.1.26 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF7373 0.50 38.0 3.45e-01 83.0% 59.2%