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OR204649.1__WMM35607.1__X__00116

Bact-Vir

OR204649.1__WMM35607.1__X__00116

Identity

Accession:
OR204649 ↗
Kingdom:
phage

Quality

86.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schitoviridae› Stoningtonvirus› Vibrio_phage_PJN101

TaxID: 3072195

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-48
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ni5A02 1.20.59.20 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › 0.71 56.0 4.67e-01 91.3% 54.7%
2qbyB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 61.0 4.85e-01 97.8% 58.2%
2k85A00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.65 52.0 4.86e-01 100.0% 81.5%
5h20A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 51.0 4.13e-01 100.0% 68.0%
4eqqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 48.0 4.83e-01 93.5% 89.6%
1j09A05 1.10.10.350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.60 48.0 3.97e-01 97.8% 73.5%
3fymA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.60 48.0 4.08e-01 93.5% 92.7%
3wctD00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.60 45.0 3.23e-01 82.6% 78.2%
2ld5A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.60 45.0 4.26e-01 100.0% 65.7%
2lbfB01 1.10.10.1410 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.60 48.0 4.38e-01 100.0% 73.9%
2ia0A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 49.0 4.73e-01 100.0% 83.3%
2dbbB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 49.0 4.72e-01 100.0% 87.3%
4kmfA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 49.0 4.56e-01 100.0% 91.9%
3d5lA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 46.0 4.72e-01 91.3% 93.3%
1u8bA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.59 47.0 4.48e-01 100.0% 78.7%
6d2qA02 1.20.80.10 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.59 48.0 3.85e-01 100.0% 44.2%
5dukB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 47.0 4.30e-01 100.0% 67.2%
3bpvA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 47.0 3.51e-01 100.0% 44.5%
3qf3D00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.56 43.0 3.23e-01 87.0% 56.2%
6oinA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 44.0 4.11e-01 100.0% 91.0%
2opeA00 3.30.540.20 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › 0.56 42.0 3.34e-01 95.7% 65.8%
4rgxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 44.0 3.32e-01 100.0% 39.6%
2j16A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.53 43.0 3.25e-01 100.0% 36.1%
8e7nB02 1.10.1840.10 Mainly Alpha › Orthogonal Bundle › main proteinase (3clpro) structure, domain 3 › main proteinase (3clpro) structure, domain 3 0.52 43.0 3.46e-01 95.7% 69.4%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5008720 101.1.1.548 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_32 0.75 64.0 5.78e-01 100.0% 72.3%
5079733 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 63.0 5.45e-01 100.0% 65.3%
4952808 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.73 62.0 5.94e-01 100.0% 85.5%
3924709 101.1.1.4 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PAX 0.72 60.0 5.48e-01 100.0% 76.9%
3884711 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.72 59.0 5.41e-01 100.0% 72.3%
3422646 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.70 57.0 5.39e-01 100.0% 76.7%
5025917 101.1.2.181 ↗ alpha arrays › HTH › HTH › winged helix domain › MCM_C 0.69 59.0 5.31e-01 100.0% 95.4%
3255248 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.68 59.0 5.18e-01 100.0% 82.9%
4988614 101.1.2.181 ↗ alpha arrays › HTH › HTH › winged helix domain › MCM_C 0.68 58.0 5.28e-01 100.0% 96.9%
3881313 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 55.0 5.02e-01 100.0% 69.2%
4955393 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 57.0 5.32e-01 100.0% 100.0%
4970540 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 55.0 4.52e-01 100.0% 53.7%
3890613 101.1.2.698 ↗ alpha arrays › HTH › HTH › winged helix domain › PF27079 0.67 55.0 5.04e-01 100.0% 75.4%
3467989 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.67 53.0 5.06e-01 100.0% 76.7%
3899987 101.1.1.12 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc3_2 0.66 54.0 4.61e-01 100.0% 54.1%
3334149 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.66 52.0 5.05e-01 100.0% 83.6%
4945040 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 52.0 4.93e-01 100.0% 75.0%
3814136 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 51.0 4.97e-01 100.0% 83.6%
3713487 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.65 51.0 4.83e-01 95.7% 75.0%
3420347 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.65 50.0 4.31e-01 97.8% 50.6%
3480171 108.1.1.99 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_6, EF-hand_7 0.65 52.0 4.69e-01 91.3% 92.3%
3243454 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.63 49.0 4.66e-01 97.8% 73.3%
4945774 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 52.0 4.23e-01 100.0% 65.0%
3898882 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 52.0 4.03e-01 100.0% 57.4%
1159997 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.62 47.0 4.54e-01 97.8% 74.1%
3575777 101.43.1.0 ↗ alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain 0.62 48.0 4.79e-01 95.7% 98.0%
4033611 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.61 47.0 4.78e-01 91.3% 100.0%
3486222 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.61 46.0 4.19e-01 84.8% 87.7%
4966784 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 49.0 4.63e-01 100.0% 75.0%
4953119 101.1.2.805 ↗ alpha arrays › HTH › HTH › winged helix domain › PF26350 0.60 48.0 3.39e-01 100.0% 58.3%
3971840 101.1.2.379 ↗ alpha arrays › HTH › HTH › winged helix domain › NGO1945_C 0.60 49.0 3.81e-01 100.0% 45.2%
3705215 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.60 47.0 4.40e-01 100.0% 86.2%
5067396 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.59 48.0 4.55e-01 100.0% 96.7%
4969831 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 48.0 3.59e-01 100.0% 41.4%
5039839 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.58 48.0 3.84e-01 100.0% 81.9%
5061099 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.58 48.0 4.51e-01 100.0% 96.7%
4068007 101.1.2.233 ↗ alpha arrays › HTH › HTH › winged helix domain › NirdL-like_HTH 0.58 47.0 4.25e-01 100.0% 72.9%
5038732 101.1.2.673 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_HVO_0163_N 0.57 47.0 3.95e-01 100.0% 64.4%
4978612 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.57 47.0 4.43e-01 100.0% 86.7%
4999697 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.57 45.0 3.80e-01 100.0% 61.1%
3391945 101.1.1.90 ↗ alpha arrays › HTH › HTH › Three-helical HTH › COQ9_N 0.56 47.0 4.20e-01 100.0% 72.9%
4413281 101.1.1.90 ↗ alpha arrays › HTH › HTH › Three-helical HTH › COQ9_N 0.56 45.0 4.44e-01 93.5% 94.0%
5019849 101.1.2.233 ↗ alpha arrays › HTH › HTH › winged helix domain › NirdL-like_HTH 0.56 45.0 4.19e-01 100.0% 73.8%
3988603 101.1.2.92 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_11 0.55 46.0 3.89e-01 100.0% 62.4%
3388284 2004.1.1.63 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › FtsK_SpoIIIE 0.52 39.0 2.39e-01 82.6% 18.8%
3711371 4230.1.1.1 ↗ alpha arrays › DnaD domain › DnaD domain › DnaD domain › DSPc 0.52 42.0 3.48e-01 100.0% 50.5%