←Back to structures

OR208547.1__WNA14214.1__phi182_46__00046

Bact-Vir

OR208547.1__WNA14214.1__phi182_46__00046

Identity

Accession:
OR208547 ↗
Kingdom:
phage

Quality

73.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Bacillus_phage_phi18-2

TaxID: 3062017

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-119
PDB
Domain cluster: rep: MK448987.1__QBX30826.1__Javan576_0038__00030__D63-167
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF09643.16 best YopX 81.7 6.80e-23 98.2% 99.2%
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ts9A00 2.30.30.210 Mainly Beta › Roll › SH3 type barrels. › Ribonuclease P/MRP, subunit p29 0.55 33.0 3.56e-01 86.8% 68.4%
1ntvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 39.0 3.59e-01 80.7% 81.6%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3964560 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 41.0 5.08e-01 87.7% 100.0%
3493399 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.65 45.0 3.98e-01 70.2% 71.5%
3495220 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.53 44.0 3.90e-01 88.6% 89.4%
3407848 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.53 41.0 4.50e-01 97.4% 98.9%
3608770 4.1.1.38 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.52 36.0 3.24e-01 88.6% 51.6%
3482225 4.1.1.300 ↗ beta barrels › SH3 › SH3 › SH3 › KN17_SH3, SH3_KIN17_C 0.51 41.0 3.98e-01 85.1% 95.4%
D2 high residues 148-229
PDB
Domain cluster: rep: NC_001884.1__NP_046649.1__SPBc2p097__00097__D35-109
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2od0A00 3.30.1460.30 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › YgaC/TfoX-N like chaperone 0.78 44.0 4.03e-01 86.6% 43.7%
2fkiA00 3.90.1150.30 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.72 44.0 3.86e-01 91.5% 42.4%
1j5wB01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.64 54.0 4.01e-01 91.5% 37.3%
2nlvA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.61 52.0 4.65e-01 100.0% 67.0%
6grrB01 3.30.457.10 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Copper amine oxidase-like, N-terminal domain 0.61 34.0 3.47e-01 92.7% 57.0%
2nwvA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.58 48.0 4.36e-01 97.6% 67.0%
4up8A02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.58 48.0 3.13e-01 96.3% 60.2%
3b8bA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.57 46.0 3.72e-01 100.0% 45.3%
3i7fB02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.57 47.0 3.18e-01 92.7% 94.4%
3facA00 2.170.150.70 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › 0.57 35.0 3.26e-01 87.8% 45.9%
2g9gA00 2.60.120.1020 Mainly Beta › Sandwich › Jelly Rolls › PAW domain 0.56 36.0 2.81e-01 73.2% 28.6%
1wdjA00 3.90.1570.10 Alpha Beta › Alpha-Beta Complex › tt1808, chain A › tt1808, chain A 0.55 46.0 3.55e-01 91.5% 77.4%
4hs5A00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.54 48.0 4.40e-01 97.6% 84.8%
1ospO02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.53 48.0 3.94e-01 100.0% 75.3%
3lv0A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.53 45.0 3.84e-01 98.8% 56.8%
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.52 41.0 2.98e-01 86.6% 37.9%
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.52 47.0 4.25e-01 100.0% 89.0%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 38.0 3.92e-01 87.8% 85.3%
1ksiA03 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.51 45.0 2.87e-01 100.0% 32.9%
2wryA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 38.0 3.18e-01 82.9% 95.5%
4qxdA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.50 44.0 3.55e-01 97.6% 62.7%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4336160 319.1.1.21 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › GvpH 0.75 46.0 4.67e-01 72.0% 63.7%
4970044 3518.1.1.1 ↗ a+b two layers › putative RnfG subunit of electron transport complex › putative RnfG subunit of electron transport complex › putative RnfG subunit of electron transport complex › FMN_bind 0.69 52.0 4.02e-01 98.8% 37.1%
3185728 5.1.5.224 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_ELP1_1st 0.67 46.0 3.01e-01 90.2% 16.2%
3997815 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.65 48.0 3.01e-01 98.8% 14.1%
166524 4059.1.1.0 ↗ a+b complex topology › Serpins › Serpins › Serpins 0.64 46.0 2.95e-01 74.4% 77.5%
3804431 5.1.3.139 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Str_synth, SGL, SSL_N 0.64 38.0 2.54e-01 90.2% 14.4%
1684841 241.13.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › N-terminal domain of secreted effector protein sifA › N-terminal domain of secreted effector protein sifA › SopD 0.64 42.0 4.19e-01 81.7% 64.7%
3331748 2003.1.5.31 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GRAS 0.63 55.0 3.54e-01 100.0% 80.0%
4995507 243.6.1.1 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 0.62 42.0 4.39e-01 84.1% 77.3%
5003057 243.6.1.0 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.60 38.0 4.08e-01 80.5% 74.3%
3690503 241.2.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like 0.60 42.0 3.82e-01 90.2% 55.0%
3303897 844.1.1.2 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.58 41.0 3.15e-01 73.2% 33.0%
4028609 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.57 43.0 3.40e-01 80.5% 53.5%
3289978 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.57 49.0 4.07e-01 95.1% 64.8%
3298515 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.57 33.0 3.01e-01 89.0% 40.9%
1032675 10.32.1.21 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PAW 0.56 36.0 2.81e-01 73.2% 28.6%
3317211 844.1.1.2 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.56 49.0 3.80e-01 100.0% 78.7%
3924339 109.2.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid 0.54 47.0 2.77e-01 100.0% 12.9%
4209885 77.1.1.1 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › Lipoprotein_1 0.54 49.0 3.97e-01 100.0% 73.3%
356532 77.1.1.1 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › Lipoprotein_1 0.53 48.0 3.50e-01 100.0% 84.8%
3628265 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.53 47.0 2.99e-01 98.8% 88.0%
4877157 77.1.1.1 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › Lipoprotein_1 0.53 48.0 3.22e-01 100.0% 34.8%
3412126 243.3.1.53 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › CHGN 0.53 43.0 4.01e-01 96.3% 70.0%
44680 77.1.1.1 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › Lipoprotein_1 0.53 41.0 3.94e-01 90.2% 72.6%
4954638 241.9.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like › DUF5655 0.53 44.0 4.03e-01 95.1% 88.6%
2773776 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 31.0 3.53e-01 98.8% 90.2%
1878466 59.1.4.1 ↗ beta complex topology › triple barrel › triple barrel › TFIID subunits TAF1-TAF7 › TAFII55_N 0.52 42.0 4.06e-01 90.2% 88.5%
3535427 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 45.0 2.92e-01 98.8% 90.1%
4298363 59.1.4.1 ↗ beta complex topology › triple barrel › triple barrel › TFIID subunits TAF1-TAF7 › TAFII55_N 0.52 42.0 3.29e-01 90.2% 45.9%
4967607 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.51 40.0 3.12e-01 80.5% 69.7%
3381458 5.3.1.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II 0.51 43.0 3.61e-01 93.9% 64.3%
3497279 59.1.4.0 ↗ beta complex topology › triple barrel › triple barrel › TFIID subunits TAF1-TAF7 0.50 41.0 3.36e-01 90.2% 54.8%
3676249 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.50 34.0 3.17e-01 70.7% 98.2%
5037569 12.3.1.19 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Gal_mutarotas_2 0.50 42.0 3.17e-01 90.2% 46.7%